当前解析结果
SmilChr02G004063| 统一新 Gene ID | SmilChr02G004063 |
|---|---|
| 名称 | SmilChr02G004063 |
| 描述 | glutamate receptor 3.3 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 62931695 - 62936721 / + |
| NCBI Gene ID | LOC131010996 |
|---|---|
| GeneID | 131010996 |
| locus_tag | - |
| NCBI Name | LOC131010996 |
| 原始查询 | SmilChr02G004063 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glutamate receptor 3.3 |
| 产物 | glutamate receptor 3.3 |
| Arabidopsis | AT1G42540 (GLR3.3)glutamate receptor 3.3 [Source:NCBI gene (formerly Entrezgene);Acc:840859] identity=64; qcov=0.977; evalue=0; confidence=high |
| Rice | Os02g0117500 (OsGLR3.1)- identity=53.9; qcov=0.968; evalue=0; confidence=high |
| GO | GO:0004930 (G protein-coupled receptor activity); GO:0004970 (glutamate-gated receptor activity); GO:0005886 (plasma membrane); GO:0007186 (G protein-coupled receptor signaling pathway) |
| KEGG | - |
| Pfam | PF00060 (Lig_chan); PF00497 (SBP_bac_3); PF01094 (ANF_receptor); PF10613 (Lig_chan-Glu_bd); PF13458 (Peripla_BP_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010996 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057794710.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057794710.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057794710.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057794710.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057794710.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:62933458 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B18,B91 |
Chr2:62933651 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B36 |
Chr2:62933776 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B139,B97,C12 |
Chr2:62933999 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B18,B91 |
Chr2:62934014 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:62934280 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:62934556 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B18,B26,B8,B91,C39 |
Chr2:62934870 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:62934921 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A2,D10 |
Chr2:62936018 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B66,C24,C73 |
Chr2:62936028 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B129,B131,B57,B9,C67 |
Chr2:62936220 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057794710.1PF13458
Peripla_BP_6 42-331 aa
PF01094
ANF_receptor 49-406 aa
PF00497
SBP_bac_3 477-809 aa
PF10613
Lig_chan-Glu_bd 483-569 aa
PF00060
Lig_chan 588-841 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794710.1 |
Pfam | PF13458 |
Peripla_BP_6 | Family | 42 | 331 | 2.9e-19 | 70.6 | Periplasmic binding protein |
XP_057794710.1 |
Pfam | PF01094 |
ANF_receptor | Domain | 49 | 406 | 3.7e-89 | 299.9 | Receptor family ligand binding region |
XP_057794710.1 |
Pfam | PF00497 |
SBP_bac_3 | Domain | 477 | 809 | 1.4e-12 | 48.2 | Bacterial extracellular solute-binding proteins, family 3 |
XP_057794710.1 |
Pfam | PF10613 |
Lig_chan-Glu_bd | Domain | 483 | 569 | 1.1e-09 | 39.2 | Ligated ion channel L-glutamate- and glycine-binding site |
XP_057794710.1 |
Pfam | PF00060 |
Lig_chan | Family | 588 | 841 | 3.5e-37 | 128.2 | Ligand-gated ion channel |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。