Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004064`

染色体: Chr02 坐标: 62939108-62941928 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004064`
名称	SmilChr02G004064
描述	uncharacterized SmilChr02G004064
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	62939108 - 62941928 / `-`

ID 对照

NCBI Gene ID	`LOC131010997`
GeneID	`131010997`
locus_tag	`-`
NCBI Name	`LOC131010997`
原始查询	`SmilChr02G004064`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509]; symbol=AT1G19260; hit=AT1G19260; species=arabidopsis; confidence=high
产物	TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509]; symbol=AT1G19260; hit=AT1G19260; species=arabidopsis; confidence=high
Arabidopsis	`AT1G19260` (AT1G19260) TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509] identity=47.3; qcov=0.888; evalue=5.38e-163; confidence=high
Rice	`Os02g0301400` - identity=43.4; qcov=0.705; evalue=1.05e-107; confidence=medium
GO	GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF05699 (Dimer_Tnp_hAT); PF14291 (DUF4371); PF27073 (FAM200-ZBED5_RNase-like)
InterPro	-
eggNOG	-
NR	GeneID:131010997

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057794711.1`
2	Cytoplasm	细胞质	0.40000	`XP_057794712.1`
3	Chromosome	染色体	0.00000	`XP_057794711.1`
4	Centromere	着丝粒	0.00000	`XP_057794711.1`
5	Chromatin	染色质	0.00000	`XP_057794711.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:62939210`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr2:62939222`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr2:62939232`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B30
`Chr2:62939232`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr2:62939238`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B122,B30,B41,B86,C74
`Chr2:62939245`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B139,B97,C12
`Chr2:62939246`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B30,C32,C53,C67,C69
`Chr2:62939250`	`GA`	`G`	1bp_deletion	frameshift_variant	1	B30
`Chr2:62939250`	`GA`	`G`	1bp_deletion	CDS_variant	1	B30
`Chr2:62939255`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B139,B97,C12
`Chr2:62939264`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr2:62939293`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B18,B91

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794711.1

673 aa

336

673

DUF4371

FAM200-ZBED5_RNase-like

Dimer_Tnp_hAT

PF14291 DUF4371 47-234 aa PF27073 FAM200-ZBED5_RNase-like 150-239 aa PF05699 Dimer_Tnp_hAT 573-630 aa

XP_057794712.1

652 aa

326

652

DUF4371

FAM200-ZBED5_RNase-like

PF14291 DUF4371 47-234 aa PF27073 FAM200-ZBED5_RNase-like 150-239 aa

XP_057794713.1

579 aa

290

579

DUF4371

FAM200-ZBED5_RNase-like

PF14291 DUF4371 47-234 aa PF27073 FAM200-ZBED5_RNase-like 150-239 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794711.1`	Pfam	`PF14291`	DUF4371	Domain	47	234	2.1e-83	280.2	ZMYM1/FAM200, RNase-like domain
`XP_057794711.1`	Pfam	`PF27073`	FAM200-ZBED5_RNase-like	Domain	150	239	1e-07	32.5	FAM200/ZBED5 RNase-like
`XP_057794711.1`	Pfam	`PF05699`	Dimer_Tnp_hAT	Domain	573	630	6e-05	23.5	hAT family C-terminal dimerisation region
`XP_057794712.1`	Pfam	`PF14291`	DUF4371	Domain	47	234	1.8e-83	280.5	ZMYM1/FAM200, RNase-like domain
`XP_057794712.1`	Pfam	`PF27073`	FAM200-ZBED5_RNase-like	Domain	150	239	9.2e-08	32.6	FAM200/ZBED5 RNase-like
`XP_057794713.1`	Pfam	`PF14291`	DUF4371	Domain	47	234	1.4e-83	280.8	ZMYM1/FAM200, RNase-like domain
`XP_057794713.1`	Pfam	`PF27073`	FAM200-ZBED5_RNase-like	Domain	150	239	8.2e-08	32.8	FAM200/ZBED5 RNase-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057938728.1
AAACTAAATATGCTGTAAATGAAACACAACGGAACAGACCTAACCTCTAAAACATTTCAAATTTCAAACTCTTCTTGCGCCGTTCCACGCCGCTGGCCTTCCACCCACACCGCCGCCGCGTCGAGGAGACTGGAGTCTACTCCGTCGGCTGCTCGCAGACTTTCGCAGAAATGGAACGTTTTTTTTCTAAAAAACGCGGAGGTCAATCTTCATGTGATTCAGTTACACCCGCTATTGAAACAAATGTAGAAGCTGAAACG...

XM_057938729.1
ATATGCTGTAAATGAAACACAACGGAACAGACCTAACCTCTAAAACATTTCAAATTTCAAACTCTTCTTGCGCCGTTCCACGCCGCTGGCCTTCCACCCACACCGCCGCCGCGTCGAGGAGACTGGAGTCTACTCCGTCGGCTGCTCGCAGACTTTCGCAGAAATGGAACGTTTTTTTTCTAAAAAACGCGGAGGTCAATCTTCATGTGATTCAGTTACACCCGCTATTGAAACAAATGTAGAAGCTGAAACGAATGTAG...

CDS

3 records

下载 CDS FASTA

LOC131010997
ATGGAACGTTTTTTTTCTAAAAAACGCGGAGGTCAATCTTCATGTGATTCAGTTACACCCGCTATTGAAACAAATGTAGAAGCTGAAACGAATGTAGAAGATGAAACAAATTTTGATGAATACATTCGTGATCCGGGGTTAAGAAAGTCAATTGAGGAGTTTCCTATTGCTTATCGTGCTCGCTTGACCGTTTCATTAGATGTTACTCGTTTTTTGTTGAAGCAAGGATTGACTTTTTGTGGACATGACGAGTCAGCTAG...

Protein

3 records

下载 Protein FASTA

XP_057794711.1
MERFFSKKRGGQSSCDSVTPAIETNVEAETNVEDETNFDEYIRDPGLRKSIEEFPIAYRARLTVSLDVTRFLLKQGLTFCGHDESASSSNRGNFLELIQWYGDHNDIVSKVLGEHAPDNNQMTCPKVQKELAHACALEVTLAIINDLGDKVFTILVDEAQDISTKEQIGLVLRYVNDKGCVVERFIGLVHVANTCSHSLKHAIDDLFVKHGLSQSKLRGQGYDGASNMRGEFNGLKALILEENPYAMYVHCFSHQLQLVV...

XP_057794712.1
MERFFSKKRGGQSSCDSVTPAIETNVEAETNVEDETNFDEYIRDPGLRKSIEEFPIAYRARLTVSLDVTRFLLKQGLTFCGHDESASSSNRGNFLELIQWYGDHNDIVSKVLGEHAPDNNQMTCPKVQKELAHACALEVTLAIINDLGDKVFTILVDEAQDISTKEQIGLVLRYVNDKGCVVERFIGLVHVANTCSHSLKHAIDDLFVKHGLSQSKLRGQGYDGASNMRGEFNGLKALILEENPYAMYVHCFSHQLQLVV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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