当前解析结果
SmilChr02G004066| 统一新 Gene ID | SmilChr02G004066 |
|---|---|
| 名称 | SmilChr02G004066 |
| 描述 | serine/threonine-protein kinase/endoribonuclease IRE1b-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 62945020 - 62947713 / - |
| NCBI Gene ID | LOC131011000 |
|---|---|
| GeneID | 131011000 |
| locus_tag | - |
| NCBI Name | LOC131011000 |
| 原始查询 | SmilChr02G004066 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | serine/threonine-protein kinase/endoribonuclease IRE1b-like |
| 产物 | serine/threonine-protein kinase/endoribonuclease IRE1b-like |
| Arabidopsis | AT2G17520 (IRE1A)Endoribonuclease/protein kinase IRE1-like protein [Source:NCBI gene (formerly Entrezgene);Acc:816258] identity=64.9; qcov=0.763; evalue=0; confidence=high |
| Rice | Os07g0471000 (IRE1)- identity=51.1; qcov=0.94; evalue=0; confidence=high |
| GO | GO:0004521 (RNA endonuclease activity); GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006397 (mRNA processing); GO:0006468 (protein phosphorylation); GO:0036498 (IRE1-mediated unfolded protein response); GO:0051082 (GO:0051082); GO:0070059 (intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress); GO:1990604 (IRE1-TRAF2-ASK1 complex) |
| KEGG | smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00069 (Pkinase); PF06479 (Ribonuc_2-5A); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011000 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057794714.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057794714.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057794714.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057794714.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057794714.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:62945270 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B139,B97,C12 |
Chr2:62945427 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:62945455 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr2:62945457 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B26,B8,C39,D11 |
Chr2:62945817 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr2:62945840 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B15,B48,B89 |
Chr2:62945896 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
Chr2:62946175 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C54,C71,D10,D4 |
Chr2:62946220 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D8 |
Chr2:62946892 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A23,D11 |
Chr2:62946893 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A1,A10,C40 |
Chr2:62946931 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B139,C12 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057794714.1PF07714
PK_Tyr_Ser-Thr 154-438 aa
PF00069
Pkinase 155-442 aa
PF06479
Ribonuc_2-5A 448-574 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794714.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 154 | 438 | 3.2e-27 | 96.2 | Protein tyrosine and serine/threonine kinase |
XP_057794714.1 |
Pfam | PF00069 |
Pkinase | Domain | 155 | 442 | 1.9e-41 | 142.9 | Protein kinase domain |
XP_057794714.1 |
Pfam | PF06479 |
Ribonuc_2-5A | Family | 448 | 574 | 1.4e-47 | 161.7 | Ribonuclease 2-5A |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。