当前解析结果
SmilChr02G004067| 统一新 Gene ID | SmilChr02G004067 |
|---|---|
| 名称 | SmilChr02G004067 |
| 描述 | serine/threonine-protein kinase/endoribonuclease IRE1b-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 62950342 - 62957051 / - |
| NCBI Gene ID | LOC131009862 |
|---|---|
| GeneID | 131009862 |
| locus_tag | - |
| NCBI Name | LOC131009862 |
| 原始查询 | SmilChr02G004067 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | serine/threonine-protein kinase/endoribonuclease IRE1b-like |
| 产物 | serine/threonine-protein kinase/endoribonuclease IRE1b-like |
| Arabidopsis | AT5G24360 (IRE1-1)inositol requiring 1-1 [Source:NCBI gene (formerly Entrezgene);Acc:832507] identity=31; qcov=0.704; evalue=4.44e-21; confidence=low |
| Rice | -- |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009862 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.40000 | XP_057793249.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057793249.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057793249.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057793249.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057793249.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:62950346 |
G |
GT |
1bp_insertion | frameshift_variant | 1 | C82 |
Chr2:62950346 |
G |
GT |
1bp_insertion | CDS_variant | 1 | C82 |
Chr2:62950365 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B25 |
Chr2:62950377 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B25,C84 |
Chr2:62950379 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B106,B82 |
Chr2:62950389 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B31,B40,B43,B88,C52 |
Chr2:62954677 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:62954816 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B12,B122,B41,B86,C74 |
Chr2:62954902 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A1,A10,B19,C40 |
Chr2:62954922 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:62954928 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B12,B122,B41,B86,C74 |
Chr2:62954939 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。