Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004070`

染色体: Chr02 坐标: 62985067-62987652 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004070`
名称	SmilChr02G004070
描述	glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	62985067 - 62987652 / `-`

ID 对照

NCBI Gene ID	`LOC131011003`
GeneID	`131011003`
locus_tag	`-`
NCBI Name	`LOC131011003`
原始查询	`SmilChr02G004070`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic
产物	glyceraldehyde-3-phosphate dehydrogenase B%2C chloroplastic
Arabidopsis	`AT1G42970` (GAPB) glyceraldehyde-3-phosphate dehydrogenase B subunit [Source:NCBI gene (formerly Entrezgene);Acc:840895] identity=87.2; qcov=1; evalue=0; confidence=high
Rice	`Os03g0129300` (GADPH) - identity=82.7; qcov=0.998; evalue=0; confidence=high
GO	GO:0004365 (glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity); GO:0006006 (glucose metabolic process); GO:0009507 (chloroplast); GO:0050661 (NADP binding); GO:0051287 (NAD binding)
KEGG	smil00710 (Carbon fixation by Calvin cycle - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF00044 (Gp_dh_N); PF02672 (CP12); PF02800 (Gp_dh_C)
InterPro	-
eggNOG	-
NR	GeneID:131011003

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057794719.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057794719.1`
3	Nucleus	细胞核	0.00000	`XP_057794719.1`
4	Chromosome	染色体	0.00000	`XP_057794719.1`
5	Centromere	着丝粒	0.00000	`XP_057794719.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:62985558`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A23,B118,B45,C35,C54
`Chr2:62985576`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B107,B140
`Chr2:62985679`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B87
`Chr2:62985679`	`GC`	`G`	1bp_deletion	CDS_variant	1	B87
`Chr2:62986343`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B115
`Chr2:62986611`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:62986830`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A1,A10,B19,C40,C47
`Chr2:62986838`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B117,B76,C60,C61,C72
`Chr2:62987176`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C35

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794719.1

452 aa

226

452

Gp_dh_N

Gp_dh_C

CP12

PF00044 Gp_dh_N 87-188 aa PF02800 Gp_dh_C 238-403 aa PF02672 CP12 428-451 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794719.1`	Pfam	`PF00044`	Gp_dh_N	Domain	87	188	7.1e-32	110.4	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
`XP_057794719.1`	Pfam	`PF02800`	Gp_dh_C	Domain	238	403	2.9e-70	236.1	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
`XP_057794719.1`	Pfam	`PF02672`	CP12	Family	428	451	5.4e-05	24.6	CP12 domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057938736.1
TGGAGTGATCAATCTTGGTGCAAAATCTGATGGTGGAGAATCAAGCTTGATCCTATCTGATATCAATCCTCAAACATCATCTTCACCACTCACTACAAATCATTCACAGCCAATAATTTCTTATAAAATTGAATCCAAAAAACACCCAAAAAAAGAAAAAAGGATAATTTCCTTGATATATTAAAACTATATATTATATTTATCTTGAAATTTTTTCCCATAGTTTGAGTTGCAGCCATGGCTTCCCATGCAGCATTGGC...

CDS

1 records

下载 CDS FASTA

LOC131011003
ATGGCTTCCCATGCAGCATTGGCATCTTCAAGAATCCCAACAAGCACGAGACTTCCCTCGAGAACCGCTCATTCTTTCCCTGCTCAATGCTTCTCTAAGAAGCTGGAGGTGGCAGAATTCTCTGGCCTTAGGTCGAGTGGATGTGTGACTTTTGCCAAGAATGCTAGGGAGGCTTCTTTCTTCGACGTGGTGGCTGCACAGCTTACTCCAACGGCCACAGGATCCACACCTGTTAAGGGAGAGACCGTCGCCAAATTGAA...

Protein

1 records

下载 Protein FASTA

XP_057794719.1
MASHAALASSRIPTSTRLPSRTAHSFPAQCFSKKLEVAEFSGLRSSGCVTFAKNAREASFFDVVAAQLTPTATGSTPVKGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDNETISVDGKIIKVVANRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEQDYSHEVANIISNASCTTNCLAPFVKILDEEFGIVKG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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