当前解析结果
SmilChr02G004074| 统一新 Gene ID | SmilChr02G004074 |
|---|---|
| 名称 | SmilChr02G004074 |
| 描述 | uncharacterized SmilChr02G004074 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 63028790 - 63037407 / + |
| NCBI Gene ID | LOC131011006 |
|---|---|
| GeneID | 131011006 |
| locus_tag | - |
| NCBI Name | LOC131011006 |
| 原始查询 | SmilChr02G004074 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os11g0266800; species=rice; confidence=high |
| 产物 | hit=Os11g0266800; species=rice; confidence=high |
| Arabidopsis | AT1G17680 (AT1G17680)tetratricopeptide repeat (TPR)-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838344] identity=44.3; qcov=0.835; evalue=0; confidence=medium |
| Rice | Os11g0266800- identity=45.8; qcov=0.903; evalue=0; confidence=high |
| GO | GO:0000127 (transcription factor TFIIIC complex); GO:0005515 (protein binding); GO:0006383 (transcription by RNA polymerase III) |
| KEGG | - |
| Pfam | PF13176 (TPR_7); PF13181 (TPR_8); PF13432 (TPR_16); PF14559 (TPR_19) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011006 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057794722.1 |
| 2 | Nucleoplasm | 核质 | 0.80000 | XP_057794722.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057794722.1 |
| 4 | Cytosol | 细胞质基质 | 0.20000 | XP_057794722.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057794722.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:63029080 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr2:63029093 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:63029163 |
GT |
G |
1bp_deletion | frameshift_variant | 4 | B121,B23,B72,B97 |
Chr2:63029163 |
GT |
G |
1bp_deletion | CDS_variant | 4 | B121,B23,B72,B97 |
Chr2:63029193 |
G |
GAT |
2bp_insertion | frameshift_variant | 2 | B23,B97 |
Chr2:63029193 |
G |
GAT |
2bp_insertion | CDS_variant | 2 | B23,B97 |
Chr2:63029208 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | B121,B23 |
Chr2:63029208 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B121,B23 |
Chr2:63031900 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr2:63032802 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr2:63032849 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr2:63033356 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057794722.1PF13181
TPR_8 207-228 aa
PF13181
TPR_8 277-305 aa
PF13181
TPR_8 454-477 aa
PF13432
TPR_16 455-506 aa
PF14559
TPR_19 464-517 aa
PF13181
TPR_8 852-878 aa
PF13176
TPR_7 853-881 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794722.1 |
Pfam | PF13181 |
TPR_8 | Repeat | 207 | 228 | 3.4e-19 | 68.0 | Tetratricopeptide repeat |
XP_057794722.1 |
Pfam | PF13181 |
TPR_8 | Repeat | 277 | 305 | 3.4e-19 | 68.0 | Tetratricopeptide repeat |
XP_057794722.1 |
Pfam | PF13181 |
TPR_8 | Repeat | 454 | 477 | 3.4e-19 | 68.0 | Tetratricopeptide repeat |
XP_057794722.1 |
Pfam | PF13432 |
TPR_16 | Repeat | 455 | 506 | 1.8e-11 | 45.0 | Tetratricopeptide repeat |
XP_057794722.1 |
Pfam | PF14559 |
TPR_19 | Repeat | 464 | 517 | 3e-20 | 73.0 | Tetratricopeptide repeat |
XP_057794722.1 |
Pfam | PF13181 |
TPR_8 | Repeat | 852 | 878 | 3.4e-19 | 68.0 | Tetratricopeptide repeat |
XP_057794722.1 |
Pfam | PF13176 |
TPR_7 | Repeat | 853 | 881 | 4.9e-15 | 55.0 | Tetratricopeptide repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。