Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004075`

染色体: Chr02 坐标: 63048750-63053190 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004075`
名称	SmilChr02G004075
描述	AT-hook motif nuclear-localized protein 10-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	63048750 - 63053190 / `+`

ID 对照

NCBI Gene ID	`LOC131011008`
GeneID	`131011008`
locus_tag	`-`
NCBI Name	`LOC131011008`
原始查询	`SmilChr02G004075`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	AT-hook motif nuclear-localized protein 10-like
产物	AT-hook motif nuclear-localized protein 10-like
Arabidopsis	`AT2G33620` (AT2G33620) AT hook motif DNA-binding family protein [Source:NCBI gene (formerly Entrezgene);Acc:817928] identity=52.2; qcov=0.814; evalue=3.39e-78; confidence=high
Rice	`Os08g0512400` (P0711H09.10-2) - identity=51.6; qcov=0.883; evalue=2.2e-76; confidence=high
GO	GO:0003680 (minor groove of adenine-thymine-rich DNA binding)
KEGG	-
Pfam	PF03479 (PCC)
InterPro	-
eggNOG	-
NR	GeneID:131011008

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057794723.1`
2	Chromosome	染色体	0.00000	`XP_057794723.1`
3	Centromere	着丝粒	0.00000	`XP_057794723.1`
4	Chromatin	染色质	0.00000	`XP_057794723.1`
5	Telomere	端粒	0.00000	`XP_057794723.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:63049588`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C12
`Chr2:63049613`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B132
`Chr2:63049709`	`GC`	`G`	1bp_deletion	frameshift_variant	1	C82
`Chr2:63049709`	`GC`	`G`	1bp_deletion	CDS_variant	1	C82
`Chr2:63049713`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B131,B136,B66,C13
`Chr2:63049726`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr2:63049739`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr2:63049740`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C40
`Chr2:63049762`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B100,D10
`Chr2:63049765`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr2:63049766`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr2:63049783`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794723.1

360 aa

180

360

PCC

PF03479 PCC 176-292 aa

XP_057794724.1

360 aa

180

360

PCC

PF03479 PCC 176-292 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794723.1`	Pfam	`PF03479`	PCC	Domain	176	292	1.9e-33	115.8	Plants and Prokaryotes Conserved (PCC) domain
`XP_057794724.1`	Pfam	`PF03479`	PCC	Domain	176	292	1.9e-33	115.8	Plants and Prokaryotes Conserved (PCC) domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057938740.1
CGTAATGATGTTTTCCTTTGCTTTATTTATTTTGCGTAACGATTTAAGAAATTAATATATATATTATATTTAACGGCATATTTATTTACGAAAAGCTTTTCTCTGCAAAAACCCTAATTTATTTCTCTACTTACAATCCTTGCAAAATTCGTTGCCGGCCTCTTTCTGCTCTTGTTATTTTTCCATTGCTGCAGAAAAATTTCCTAATTTCTTGGTAATTTCCGAAAATTTGGCCGAAAAAAAAAATGTCTGGATCATCT...

XM_057938741.1
AAGATATTCGTGATTTTTCTCTATTTTTCTTGATTTTTCTGAATTTTGGCTGATTTTCCGGGTGTTATTTTATTCGTAAGTTGGTCGAAAATTGTGAATTTTAAGGAACTGTTTCTGTTTGCCGAGGCGTAATTTTTAGAGTTTTTTGATATTTTTGCTTGATCCGTTCGTGAGTTTGGTGAATTCTGCTGAATTTCGGAGGTTTTATATCAAAAAAGCTGTTTCCTTTTTCAACTTGTTTCACTGTGTTTCTTTTATTT...

CDS

2 records

下载 CDS FASTA

LOC131011008
ATGTCTGGATCATCTGAAGCTACGGCGGCGATGTCCAACCGGGAGCCGTTCAGCATGAGCTCGCCGTCGCCGGTGATGAACCCGGTGGCTTCGCAACCGCAGCTGGACCAGCAAATGCACATGTCTTATATGAACTCCGACGGCGGCGGTGCATTCAGGCAAGTTGGATCGTCGCCCCCGCCGTTTCAATCTGTCCCCGCTGGCGCCACCGTAATAAGCCACTCCACCTCCGACCAGAAGCGGAAGAGGGGCCGGCCAAG...

Protein

2 records

下载 Protein FASTA

XP_057794723.1
MSGSSEATAAMSNREPFSMSSPSPVMNPVASQPQLDQQMHMSYMNSDGGGAFRQVGSSPPPFQSVPAGATVISHSTSDQKRKRGRPRKYGPDGSMNVPLGSPQPPINAAMPQHQQQQNFSPPPVAAAVAPLSTQLESLPSMDGSGSPMAKKARGRPRGSRNKVKQHSEALGSTGIGFVPHILNVNAGEDIASKIMAICQNGPRAVCVLSANGAISMVTLRQQATSGGTATYEGRWDILSLSGSFMLTEVAGQKSRTGGLS...

XP_057794724.1
MSGSSEATAAMSNREPFSMSSPSPVMNPVASQPQLDQQMHMSYMNSDGGGAFRQVGSSPPPFQSVPAGATVISHSTSDQKRKRGRPRKYGPDGSMNVPLGSPQPPINAAMPQHQQQQNFSPPPVAAAVAPLSTQLESLPSMDGSGSPMAKKARGRPRGSRNKVKQHSEALGSTGIGFVPHILNVNAGEDIASKIMAICQNGPRAVCVLSANGAISMVTLRQQATSGGTATYEGRWDILSLSGSFMLTEVAGQKSRTGGLS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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