当前解析结果
SmilChr02G004081| 统一新 Gene ID | SmilChr02G004081 |
|---|---|
| 名称 | SmilChr02G004081 |
| 描述 | uncharacterized SmilChr02G004081 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 63092372 - 63096688 / + |
| NCBI Gene ID | LOC131009864 |
|---|---|
| GeneID | 131009864 |
| locus_tag | - |
| NCBI Name | LOC131009864 |
| 原始查询 | SmilChr02G004081 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0202300; species=rice; confidence=low |
| 产物 | hit=Os08g0202300; species=rice; confidence=low |
| Arabidopsis | AT3G01410 (AT3G01410)Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821319] identity=44.7; qcov=0.103; evalue=1.12e-12; confidence=weak |
| Rice | Os08g0202300- identity=29.7; qcov=0.447; evalue=6.98e-57; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00075 (RNase_H); PF00078 (RVT_1); PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009864 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057793251.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057793251.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057793251.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057793251.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057793251.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:63092596 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr2:63092968 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr2:63093148 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr2:63093165 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr2:63093183 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr2:63093196 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr2:63093204 |
AGC |
A |
2bp_deletion | frameshift_variant | 1 | D7 |
Chr2:63093204 |
AGC |
A |
2bp_deletion | CDS_variant | 1 | D7 |
Chr2:63093235 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | D6,D7 |
Chr2:63093262 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | D6,D7 |
Chr2:63093263 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A8,C75 |
Chr2:63093287 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793251.1PF00078
RVT_1 65-224 aa
PF17919
RT_RNaseH_2 288-386 aa
PF17917
RT_RNaseH 319-415 aa
PF00075
RNase_H 462-556 aa
PF13456
RVT_3 465-583 aa
PF17921
Integrase_H2C2 659-710 aa
PF00665
rve 729-812 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793251.1 |
Pfam | PF00078 |
RVT_1 | Domain | 65 | 224 | 9.1e-34 | 117.8 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057793251.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 288 | 386 | 2.3e-22 | 79.7 | RNase H-like domain found in reverse transcriptase |
XP_057793251.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 319 | 415 | 7.7e-19 | 68.5 | RNase H-like domain found in reverse transcriptase |
XP_057793251.1 |
Pfam | PF00075 |
RNase_H | Domain | 462 | 556 | 1.2e-08 | 35.9 | RNase H |
XP_057793251.1 |
Pfam | PF13456 |
RVT_3 | Domain | 465 | 583 | 3.4e-21 | 76.1 | Reverse transcriptase-like |
XP_057793251.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 659 | 710 | 2.2e-08 | 34.8 | Integrase zinc binding domain |
XP_057793251.1 |
Pfam | PF00665 |
rve | Domain | 729 | 812 | 3.7e-13 | 50.3 | Integrase core domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。