Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004089`

染色体: Chr02 坐标: 63165024-63170007 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004089`
名称	SmilChr02G004089
描述	dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	63165024 - 63170007 / `-`

ID 对照

NCBI Gene ID	`LOC131011018`
GeneID	`131011018`
locus_tag	`-`
NCBI Name	`LOC131011018`
原始查询	`SmilChr02G004089`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A
产物	dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A
Arabidopsis	`AT1G76400` (AT1G76400) Ribophorin I [Source:NCBI gene (formerly Entrezgene);Acc:843972] identity=64.6; qcov=0.959; evalue=0; confidence=high
Rice	`Os05g0301500` (OST1A) - identity=63; qcov=0.959; evalue=0; confidence=high
GO	GO:0008250 (oligosaccharyltransferase complex); GO:0016020 (membrane); GO:0018279 (GO:0018279)
KEGG	smil00510 (N-Glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00513 (Various types of N-glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage))
Pfam	PF04597 (Ribophorin_I)
InterPro	-
eggNOG	-
NR	GeneID:131011018

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057794735.1`
2	Endoplasmic reticulum lumen	内质网腔	0.20000	`XP_057794735.1`
3	Endoplasmic reticulum membrane	内质网膜	0.20000	`XP_057794735.1`
4	Nucleus	细胞核	0.00000	`XP_057794735.1`
5	Chromosome	染色体	0.00000	`XP_057794735.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:63165287`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A1,A10,B19,B93,C2
`Chr2:63166014`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B22,B99
`Chr2:63166081`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:63166118`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C47
`Chr2:63166179`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B95,C14
`Chr2:63167833`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr2:63167998`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C12
`Chr2:63168058`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B95,C14
`Chr2:63168124`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr2:63168251`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr2:63168402`	`GGT`	`G`	2bp_deletion	frameshift_variant	1	C12
`Chr2:63168402`	`GGT`	`G`	2bp_deletion	CDS_variant	1	C12

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794735.1

615 aa

308

615

Ribophorin_I

PF04597 Ribophorin_I 29-455 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794735.1`	Pfam	`PF04597`	Ribophorin_I	Family	29	455	2.7e-147	492.1	Ribophorin I

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057938752.1
AAAATACATATTTTAATCTATTTTTCATGTGTTGGATATGGTGGAAAATTTATGGAATTTGGGGATAGTCGTCACTCCTCATATCATACACTGTGGATCGAAGTCTTTGAAGCTCCACTCCACATATGCGTGTTTATCAAAGCAAAATAGAAAGGGAAAGAAGCAAGGGAAAAGCGAATTGCGAGATCAGCTGATATCACGTTGACTACAAACCAAAACGCGACACAGTAGGCAGCTCTCGGAATCAGTTTCGTTTCCAA...

CDS

1 records

下载 CDS FASTA

LOC131011018
ATGAAGCGACTGCGCTCCGATTTCTCTCATCTCTTCTTCGTTTTCGGATTTTTTATGCTTTTCTCGAATGTCTGCTCCGATCTCGTCATTTCCAAACTGGATCGCCAGATTGATGTATCATCACAGATAGTTCGGTTCACTACATCACTGAAGGTAGAAAATAATGGCGCTGCAGCAGTATCAAAGGTTTTGTTGCCCTACCATGAAAATCAAGCAAAGAACTTGGCTTTTTTGTCGGTGAAGATTACTGAAGGGAAAGG...

Protein

1 records

下载 Protein FASTA

XP_057794735.1
MKRLRSDFSHLFFVFGFFMLFSNVCSDLVISKLDRQIDVSSQIVRFTTSLKVENNGAAAVSKVLLPYHENQAKNLAFLSVKITEGKGKTKTSSDRLPVDVIHPEGMPPALTWYAVSLPKELGKGGSLTLEVKAVFTHLLTPFPEKITQADAQLVAFQDGAHYLSPYTVKIQSLTVKLPEPKVESYTRLENTKFSGSEIKYGPYENIPPFSHPTIVVHFVSNKPFSVAQELVREIEISHWGNVQVTENYNLVHAGAELTGE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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