Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004090`

染色体: Chr02 坐标: 63172916-63177590 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004090`
名称	SmilChr02G004090
描述	spliceosome-associated protein 130 A
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	63172916 - 63177590 / `-`

ID 对照

NCBI Gene ID	`LOC131011019`
GeneID	`131011019`
locus_tag	`-`
NCBI Name	`LOC131011019`
原始查询	`SmilChr02G004090`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	spliceosome-associated protein 130 A
产物	spliceosome-associated protein 130 A
Arabidopsis	`AT3G55220` (SAP130b) Cleavage and polyadenylation specificity factor (CPSF) A subunit protein [Source:NCBI gene (formerly Entrezgene);Acc:824688] identity=87.3; qcov=1; evalue=0; confidence=high
Rice	`Os02g0137400` - identity=84; qcov=0.709; evalue=0; confidence=high
GO	GO:0000398 (mRNA splicing, via spliceosome); GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0005686 (U2 snRNP); GO:0030620 (U2 snRNA binding)
KEGG	smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF03178 (CPSF_A); PF10433 (Beta-prop_RSE1_1st); PF23726 (Beta-prop_RSE1_2nd)
InterPro	-
eggNOG	-
NR	GeneID:131011019

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057794736.1`
2	Nucleoplasm	核质	1.00000	`XP_057794736.1`
3	Chromosome	染色体	0.80000	`XP_057794736.1`
4	Nucleolus	核仁	0.40000	`XP_057794736.1`
5	Chromatin	染色质	0.20000	`XP_057794736.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:63173207`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B45,C54
`Chr2:63173711`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B47,B80,B84,C24
`Chr2:63173878`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B15
`Chr2:63174801`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B1,B125,B17,B90,B92
`Chr2:63174948`	`TC`	`T`	1bp_deletion	frameshift_variant	1	C15
`Chr2:63174948`	`TC`	`T`	1bp_deletion	CDS_variant	1	C15
`Chr2:63175071`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B132
`Chr2:63175221`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A1,A10,B19,B93,C2
`Chr2:63175404`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:63175704`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B40,D10
`Chr2:63176265`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:63176330`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B97

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794736.1

1211 aa

606

1211

Beta-prop_RSE1_1st

Beta-prop_RSE1_2nd

CPSF_A

PF10433 Beta-prop_RSE1_1st 14-393 aa PF23726 Beta-prop_RSE1_2nd 442-762 aa PF03178 CPSF_A 858-1177 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794736.1`	Pfam	`PF10433`	Beta-prop_RSE1_1st	Repeat	14	393	1.4e-125	419.6	RSE1/DDB1/CPSF1 first beta-propeller
`XP_057794736.1`	Pfam	`PF23726`	Beta-prop_RSE1_2nd	Repeat	442	762	1.1e-91	308.4	RSE1/DDB1/CPSF1 second beta-propeller
`XP_057794736.1`	Pfam	`PF03178`	CPSF_A	Repeat	858	1177	1.1e-100	337.8	CPSF A subunit region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057938753.1
TGAAAGTTGAAGATCTCAAAATTTGGGGCATAAACTCCATTTAGCCAAACGTGGTCTTAAAACCACCAAATAAACCATTTCCCTCCCACTTCACCTCCCCAAATCCTAGGGTTTCTCTAAACCCTCTTCTCTCTCTCTCTCAACACTCAAATCTGACGCTCTTCTTCTCCGCTACTCACCATGTACCTCTACAGTCTTACACTTCAACAATCCACCGGAATCCTCTGCGCCATAAATGGCAGCTTCTCCGGCGGCAAATC...

CDS

1 records

下载 CDS FASTA

LOC131011019
ATGTACCTCTACAGTCTTACACTTCAACAATCCACCGGAATCCTCTGCGCCATAAATGGCAGCTTCTCCGGCGGCAAATCGCAAGAAATCGCGGTGGCGCGCGGCAAGGTTCTGGAGCTTCTGCGCCCCGACGACAACGGTAAGCTCCAATCTCTCCTCTCTGTTGAAATCTTCGGTGCTATTCGCTCATTAGCTCAATTTCGACTCACTGGTGCGCAAAAGGATTACATAGTGGTTGGGTCGGATTCCGGGCGCATCGT...

Protein

1 records

下载 Protein FASTA

XP_057794736.1
MYLYSLTLQQSTGILCAINGSFSGGKSQEIAVARGKVLELLRPDDNGKLQSLLSVEIFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNTLDKVHQETFGKSGCRRIVPGQYLAIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGVDCGFDNPIFAAIELDYSEADQDPTGQAANEAQKHLTFYELDLGLNHVSRKWSEQVDNGANMLVTVPGGGDGPSGVLVCAENFVIYKNQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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