Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004096`

染色体: Chr02 坐标: 63272116-63275906 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004096`
名称	SmilChr02G004096
描述	cinnamoyl-CoA reductase 1-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	63272116 - 63275906 / `+`

ID 对照

NCBI Gene ID	`LOC131011026`
GeneID	`131011026`
locus_tag	`-`
NCBI Name	`LOC131011026`
原始查询	`SmilChr02G004096`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cinnamoyl-CoA reductase 1-like
产物	cinnamoyl-CoA reductase 1-like
Arabidopsis	`AT2G33590` (CRL1) NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817925] identity=64.6; qcov=0.96; evalue=2.05e-144; confidence=high
Rice	`Os06g0623300` (OsCCR8) - identity=57; qcov=0.994; evalue=3.92e-133; confidence=high
GO	GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor)
KEGG	-
Pfam	PF01073 (3Beta_HSD); PF01370 (Epimerase); PF02719 (Polysacc_synt_2); PF07993 (NAD_binding_4); PF13460 (NAD_binding_10); PF16363 (GDP_Man_Dehyd)
InterPro	-
eggNOG	-
NR	GeneID:131011026

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057794740.1`
2	Cytoplasm	细胞质	0.60000	`XP_057794740.1`
3	Nucleus	细胞核	0.00000	`XP_057794740.1`
4	Chromosome	染色体	0.00000	`XP_057794740.1`
5	Centromere	着丝粒	0.00000	`XP_057794740.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:63272242`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B47,B80,B84,C24
`Chr2:63272775`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A2,A9,B102,B122,C84
`Chr2:63272893`	`T`	`TC`	1bp_insertion	frameshift_variant	9	B110,B115,B13,B135,B49,B98,C45,C58,C78
`Chr2:63272933`	`TC`	`T`	1bp_deletion	frameshift_variant	2	B84,D2
`Chr2:63272933`	`TC`	`T`	1bp_deletion	CDS_variant	2	B84,D2
`Chr2:63272936`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C12
`Chr2:63273322`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B109,B20,B34,B84,C16
`Chr2:63273325`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A2,B31
`Chr2:63273415`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:63273889`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr2:63273952`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B1,B12,B86
`Chr2:63274057`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B134,B47,C17

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794740.1

321 aa

160

321

Polysacc_synt_2

Epimerase

NAD_binding_4

3Beta_HSD

GDP_Man_Dehyd

NAD_binding_10

PF02719 Polysacc_synt_2 8-131 aa PF01370 Epimerase 8-245 aa PF07993 NAD_binding_4 10-196 aa PF01073 3Beta_HSD 10-238 aa PF16363 GDP_Man_Dehyd 10-266 aa PF13460 NAD_binding_10 12-189 aa

XP_057794741.1

321 aa

160

321

Polysacc_synt_2

Epimerase

NAD_binding_4

3Beta_HSD

GDP_Man_Dehyd

NAD_binding_10

PF02719 Polysacc_synt_2 8-131 aa PF01370 Epimerase 8-245 aa PF07993 NAD_binding_4 10-196 aa PF01073 3Beta_HSD 10-238 aa PF16363 GDP_Man_Dehyd 10-266 aa PF13460 NAD_binding_10 12-189 aa

XP_057794742.1

321 aa

160

321

Polysacc_synt_2

Epimerase

NAD_binding_4

3Beta_HSD

GDP_Man_Dehyd

NAD_binding_10

PF02719 Polysacc_synt_2 8-131 aa PF01370 Epimerase 8-245 aa PF07993 NAD_binding_4 10-196 aa PF01073 3Beta_HSD 10-238 aa PF16363 GDP_Man_Dehyd 10-266 aa PF13460 NAD_binding_10 12-189 aa

XP_057794743.1

321 aa

160

321

Polysacc_synt_2

Epimerase

NAD_binding_4

3Beta_HSD

GDP_Man_Dehyd

NAD_binding_10

PF02719 Polysacc_synt_2 8-131 aa PF01370 Epimerase 8-245 aa PF07993 NAD_binding_4 10-196 aa PF01073 3Beta_HSD 10-238 aa PF16363 GDP_Man_Dehyd 10-266 aa PF13460 NAD_binding_10 12-189 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794740.1`	Pfam	`PF02719`	Polysacc_synt_2	Family	8	131	7.9e-05	22.7	Polysaccharide biosynthesis protein
`XP_057794740.1`	Pfam	`PF01370`	Epimerase	Family	8	245	1.9e-26	93.7	NAD dependent epimerase/dehydratase family
`XP_057794740.1`	Pfam	`PF07993`	NAD_binding_4	Family	10	196	1.4e-10	41.5	Male sterility protein
`XP_057794740.1`	Pfam	`PF01073`	3Beta_HSD	Family	10	238	2.1e-17	63.8	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057794740.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	10	266	4.8e-17	63.1	GDP-mannose 4,6 dehydratase
`XP_057794740.1`	Pfam	`PF13460`	NAD_binding_10	Domain	12	189	2.5e-13	51.0	NAD(P)H-binding
`XP_057794741.1`	Pfam	`PF02719`	Polysacc_synt_2	Family	8	131	7.9e-05	22.7	Polysaccharide biosynthesis protein
`XP_057794741.1`	Pfam	`PF01370`	Epimerase	Family	8	245	1.9e-26	93.7	NAD dependent epimerase/dehydratase family
`XP_057794741.1`	Pfam	`PF07993`	NAD_binding_4	Family	10	196	1.4e-10	41.5	Male sterility protein
`XP_057794741.1`	Pfam	`PF01073`	3Beta_HSD	Family	10	238	2.1e-17	63.8	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057794741.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	10	266	4.8e-17	63.1	GDP-mannose 4,6 dehydratase
`XP_057794741.1`	Pfam	`PF13460`	NAD_binding_10	Domain	12	189	2.5e-13	51.0	NAD(P)H-binding
`XP_057794742.1`	Pfam	`PF02719`	Polysacc_synt_2	Family	8	131	7.9e-05	22.7	Polysaccharide biosynthesis protein
`XP_057794742.1`	Pfam	`PF01370`	Epimerase	Family	8	245	1.9e-26	93.7	NAD dependent epimerase/dehydratase family
`XP_057794742.1`	Pfam	`PF07993`	NAD_binding_4	Family	10	196	1.4e-10	41.5	Male sterility protein
`XP_057794742.1`	Pfam	`PF01073`	3Beta_HSD	Family	10	238	2.1e-17	63.8	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057794742.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	10	266	4.8e-17	63.1	GDP-mannose 4,6 dehydratase
`XP_057794742.1`	Pfam	`PF13460`	NAD_binding_10	Domain	12	189	2.5e-13	51.0	NAD(P)H-binding
`XP_057794743.1`	Pfam	`PF02719`	Polysacc_synt_2	Family	8	131	7.9e-05	22.7	Polysaccharide biosynthesis protein
`XP_057794743.1`	Pfam	`PF01370`	Epimerase	Family	8	245	1.9e-26	93.7	NAD dependent epimerase/dehydratase family
`XP_057794743.1`	Pfam	`PF07993`	NAD_binding_4	Family	10	196	1.4e-10	41.5	Male sterility protein
`XP_057794743.1`	Pfam	`PF01073`	3Beta_HSD	Family	10	238	2.1e-17	63.8	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057794743.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	10	266	4.8e-17	63.1	GDP-mannose 4,6 dehydratase
`XP_057794743.1`	Pfam	`PF13460`	NAD_binding_10	Domain	12	189	2.5e-13	51.0	NAD(P)H-binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057938760.1
ACAGAAGAGGAAGAGAAATTGAGGTCATGAATTACGCAATCCAGTGAATTAGTTAGCGGTGGTGCCACAATAAATCCTCCATAAATATCGCAGGTGGCTATCGGCAAAGAATGGCGGAGAAAGATAGGATTGTGTGTGTTACCGGCGCCGGAGGCTTCGTTGCTTCTTGGCTCATCAAACTTCTTCTCTCTCAAGGTTACACAGTTCATGGCACCCTCCGAAATCCTGGGGATGAGAAATACGCTCATTTGAGGAAACTT...

XM_057938758.1
ACAGAAGAGGAAGAGAAATTGAGGTCATGAATTACGCAATCCAGTGAATTAGTTAGCGGTGGTGCCACAATAAATCCTCCATAAATATCGCAGGTGGCTATCGGCAAAGAATGGCGGAGAAAGATAGGATTGTGTGTGTTACCGGCGCCGGAGGCTTCGTTGCTTCTTGGCTCATCAAACTTCTTCTCTCTCAAGGTTACACAGTTCATGGCACCCTCCGAAATCCTGGGGATGAGAAATACGCTCATTTGAGGAAACTT...

CDS

4 records

下载 CDS FASTA

LOC131011026
ATGGCGGAGAAAGATAGGATTGTGTGTGTTACCGGCGCCGGAGGCTTCGTTGCTTCTTGGCTCATCAAACTTCTTCTCTCTCAAGGTTACACAGTTCATGGCACCCTCCGAAATCCTGGGGATGAGAAATACGCTCATTTGAGGAAACTTGACAATGCAGCTGAAAAGCTGAAACTCTTCAAGGCAGACTTGCTCGATTTCGACTCCATTCTTGCAGCAGTTAAAGGATGTGTTGGGGTTTTCCACGTCGCCTGCCCCGT...

Protein

4 records

下载 Protein FASTA

XP_057794740.1
MAEKDRIVCVTGAGGFVASWLIKLLLSQGYTVHGTLRNPGDEKYAHLRKLDNAAEKLKLFKADLLDFDSILAAVKGCVGVFHVACPVPQSSVPNPEVELVQPALDGTFNVLKACSEAKIGRVVVVSSVSAVFMIPDWPKDRVMDESCWSDKEYCRKTNNWYCYSKTVAEAEAFEYAKKSGLNVITVCPALVLGPMLQHTANASSLALIKLLKESYDEIENNLRKIVDVRDVAEALILVYEKPEAKGRYICMGHLIKNAEL...

XP_057794741.1
MAEKDRIVCVTGAGGFVASWLIKLLLSQGYTVHGTLRNPGDEKYAHLRKLDNAAEKLKLFKADLLDFDSILAAVKGCVGVFHVACPVPQSSVPNPEVELVQPALDGTFNVLKACSEAKIGRVVVVSSVSAVFMIPDWPKDRVMDESCWSDKEYCRKTNNWYCYSKTVAEAEAFEYAKKSGLNVITVCPALVLGPMLQHTANASSLALIKLLKESYDEIENNLRKIVDVRDVAEALILVYEKPEAKGRYICMGHLIKNAEL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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