Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004131`

染色体: Chr02 坐标: 63564095-63567356 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004131`
名称	SmilChr02G004131
描述	protein GET1-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	63564095 - 63567356 / `-`

ID 对照

NCBI Gene ID	`LOC131011059`
GeneID	`131011059`
locus_tag	`-`
NCBI Name	`LOC131011059`
原始查询	`SmilChr02G004131`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein GET1-like
产物	protein GET1-like
Arabidopsis	`AT4G16444` (AT4G16444) tail-anchored protein insertion receptor WRB-like protein [Source:NCBI gene (formerly Entrezgene);Acc:827341] identity=54.4; qcov=0.875; evalue=5.57e-46; confidence=medium
Rice	`Os06g0198700` - identity=48.3; qcov=0.899; evalue=2.05e-32; confidence=medium
GO	GO:0071816 (tail-anchored membrane protein insertion into ER membrane)
KEGG	smil03060 (Protein export - Salvia miltiorrhiza (redroot sage))
Pfam	PF04420 (CHD5)
InterPro	-
eggNOG	-
NR	GeneID:131011059

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057794790.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057794795.1`
3	Peroxisome	过氧化物酶体	0.20000	`XP_057794795.1`
4	Nucleus	细胞核	0.00000	`XP_057794790.1`
5	Chromosome	染色体	0.00000	`XP_057794790.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:63564410`	`T`	`TC`	1bp_insertion	frameshift_variant	2	A18,B100
`Chr2:63564410`	`T`	`TC`	1bp_insertion	CDS_variant	2	A18,B100
`Chr2:63564434`	`G`	`A`	EMS_canonical_SNV	stop_gained	12	A2,B101,B33,B72,B87,C29,C31,C34,C49,C79,C85,D9
`Chr2:63564879`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C25,C81
`Chr2:63565199`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B98
`Chr2:63565437`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A1,B44,C7
`Chr2:63565463`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr2:63565517`	`TTA`	`T`	2bp_deletion	frameshift_variant	2	B34,C36
`Chr2:63565517`	`TTA`	`T`	2bp_deletion	CDS_variant	2	B34,C36
`Chr2:63567075`	`G`	`GA`	1bp_insertion	frameshift_variant	112	A10,A14,A15,A16,A18,A2,A20,A24,A25,A6,A7,B103,B104,B105,B107,B109,B120,B121,B123,B124,B127,B128,B130,B131,B133,B134,B135,B136,B138,B14,B140,B16,B19,B2,B20,B22,B25,B27,B3,B30,B33,B34,B37,B38,B40,B46,B47,B48,B5,B51,B54,B55,B56,B60,B72,B74,B75,B77,B81,B83,B86,B87,B88,B90,B92,B96,B99,C1,C10,C12,C13,C15,C16,C17,C18,C19,C2,C20,C21,C23,C28,C29,C30,C31,C32,C33,C34,C38,C39,C40,C43,C49,C59,C6,C68,C7,C70,C73,C79,C8,C80,C82,C84,C85,C86,C9,D1,D10,D4,D5,D6,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794794.1

198 aa

198

CHD5

PF04420 CHD5 63-174 aa

XP_057794795.1

178 aa

178

CHD5

PF04420 CHD5 44-154 aa

XP_057794796.1

168 aa

168

CHD5

PF04420 CHD5 44-144 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794794.1`	Pfam	`PF04420`	CHD5	Family	63	174	1.3e-07	32.4	CHD5-like protein
`XP_057794795.1`	Pfam	`PF04420`	CHD5	Family	44	154	1.7e-08	35.1	CHD5-like protein
`XP_057794796.1`	Pfam	`PF04420`	CHD5	Family	44	144	4.1e-08	33.9	CHD5-like protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057938809.1
ACGGGGGAGTAAATAATATCTAAAGGCAAATAATGACCTACCCACGACGTCGTTTAAGCCACCGTTCATTCTCTGGGAGAATAGAACAATTGCTTCCCACAGAATAAGAACAAAAAAAGAAGAGGAAAAAACACAGCCAGAAAAAGCGAAGAAATGGAAGAAATTCAAACGGGGCAAGGGAAATCATTTGCAGCTCCAGTTATTTTCATCCTTGTATTTTCTTTCCTCTTCGTATCTAAGTACATCGAATCCCAAAAAAA...

XM_057938807.1
ATAATATCTAAAGGCAAATAATGACCTACCCACGACGTCGTTTAAGCCACCGTTCATTCTCTGGGAGAATAGAACAATTGCTTCCCACAGAATAAGAACAAAAAAAGAAGAGGAAAAAACACAGCCAGAAAAAGCGAAGAAATGGAAGAAATTCAAACGGGGCAAGGGAAATCATTTGCAGCTCCAGTTATTTTCATCCTTGTATTTTCTTTCCTCTTCGTATCTAAGTACATCGAATCCCAAAAAAACAAGGTTTTCTT...

CDS

6 records

下载 CDS FASTA

LOC131011059
ATGGAAGAAATTCAAACGGGGCAAGGGAAATCATTTGCAGCTCCAGTTATTTTCATCCTTGTATTTTCTTTCCTCTTCGTATCTAAGTACATCGAATCCCAAAAAAACAAGAAAGGATCCGGCGAAAATTTGGATGTTAGATTGCGACAAGAAATCAAGCAGCTTTTGAAGGAGGCCAATTCTTTATCGCAGCCTTCAACATTCGCTCAAGCTGTAAAACTGAGAAGAACGGCTGCTGCGAAGGAGAAGGAACTTGCAAA...

LOC131011059
ATGGAAGAAATTCAAACGGGGCAAGGGAAATCATTTGCAGCTCCAGTTATTTTCATCCTTGTATTTTCTTTCCTCTTCGTATCTAAGTACATCGAATCCCAAAAAAACAAGGTTTTCTTCCTTTTTTTCTTTTTTGGTGGACTTATTGATTTCGCTTTCCAATTTTGGGAGAAAGGATCCGGCGAAAATTTGGATGTTAGATTGCGACAAGAAATCAAGCAGCTTTTGAAGGAGGCCAATTCTTTATCGCAGCCTTCAAC...

Protein

6 records

下载 Protein FASTA

XP_057794790.1
MEEIQTGQGKSFAAPVIFILVFSFLFVSKYIESQKNKVFFLFFFFGGLIDFAFQFWEKGSGENLDVRLRQEIKQLLKEANSLSQPSTFAQAVKLRRTAAAKEKELAKLCQVYKLFQIILFLSNPEMSNTISGLDAAVLTLQDLEMQEKDMKLSVSSYGKHLMISKVFTYFVLILWFWKIPVATIPDQLVHPFGRLLSWRAGTSLKDSVVIGVIPWLIVSHRVSKFICRKVFE

XP_057794792.1
MEEIQTGQGKSFAAPVIFILVFSFLFVSKYIESQKNKVFFLFFFFGGLIDFAFQFWEKGSGENLDVRLRQEIKQLLKEANSLSQPSTFAQAVKLRRTAAAKEKELAKLCQVYKLFQIILFLSNPEMSNTISGLDAAVLTLQDLEMQEKDMKLSVSSYGKHLMISKVFTYFVLILWFWKIPVATIPDQLVHPFGRLLSWRAGTSLKDSVVEGIRVRFSLQGKF

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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