Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004171`

染色体: Chr02 坐标: 64004190-64011508 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004171`
名称	SmilChr02G004171
描述	putative E3 ubiquitin-protein ligase LIN-1
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	64004190 - 64011508 / `-`

ID 对照

NCBI Gene ID	`LOC131011093`
GeneID	`131011093`
locus_tag	`-`
NCBI Name	`LOC131011093`
原始查询	`SmilChr02G004171`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative E3 ubiquitin-protein ligase LIN-1
产物	putative E3 ubiquitin-protein ligase LIN-1
Arabidopsis	`AT3G06880` (AT3G06880) Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819873] identity=24.7; qcov=0.518; evalue=1.31e-59; confidence=weak
Rice	`Os01g0229700` (OsWD40-9) - identity=39.5; qcov=0.292; evalue=3.04e-71; confidence=weak
GO	GO:0004842 (ubiquitin-protein transferase activity); GO:0005515 (protein binding); GO:0016567 (protein ubiquitination)
KEGG	-
Pfam	PF00400 (WD40); PF04564 (U-box); PF23568 (ARM_LIN); PF23628 (ARM_LIN_C); PF23654 (ARM_LIN_2nd)
InterPro	-
eggNOG	-
NR	GeneID:131011093

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.60000	`XP_057794843.1`
2	Cytoplasm	细胞质	0.60000	`XP_057794846.1`
3	Nucleus	细胞核	0.20000	`XP_057794843.1`
4	Chromosome	染色体	0.00000	`XP_057794843.1`
5	Centromere	着丝粒	0.00000	`XP_057794843.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:64004663`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B125,B17,B90,B92
`Chr2:64004750`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:64004891`	`AT`	`A`	1bp_deletion	frameshift_variant	2	A8,B64
`Chr2:64004891`	`AT`	`A`	1bp_deletion	CDS_variant	2	A8,B64
`Chr2:64005002`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B113
`Chr2:64005761`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A10,B120,B77
`Chr2:64005806`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B69,D3
`Chr2:64006256`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr2:64006897`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A10,B120,B77
`Chr2:64007512`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C57
`Chr2:64007663`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B69,D3
`Chr2:64007673`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A10,B120,B77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794843.1

1464 aa

732

1464

ARM_LIN

U-box

ARM_LIN_2nd

ARM_LIN_C

WD40

PF23568 ARM_LIN 11-264 aa PF04564 U-box 492-562 aa PF23654 ARM_LIN_2nd 632-793 aa PF23628 ARM_LIN_C 794-1155 aa PF00400 WD40 1218-1251 aa PF00400 WD40 1433-1462 aa

XP_057794844.1

1464 aa

732

1464

ARM_LIN

U-box

ARM_LIN_2nd

ARM_LIN_C

WD40

PF23568 ARM_LIN 11-264 aa PF04564 U-box 492-562 aa PF23654 ARM_LIN_2nd 632-793 aa PF23628 ARM_LIN_C 794-1155 aa PF00400 WD40 1218-1251 aa PF00400 WD40 1433-1462 aa

XP_057794845.1

1464 aa

732

1464

ARM_LIN

U-box

ARM_LIN_2nd

ARM_LIN_C

WD40

PF23568 ARM_LIN 11-264 aa PF04564 U-box 492-562 aa PF23654 ARM_LIN_2nd 632-793 aa PF23628 ARM_LIN_C 794-1155 aa PF00400 WD40 1218-1251 aa PF00400 WD40 1433-1462 aa

XP_057794846.1

1337 aa

668

1337

ARM_LIN

U-box

ARM_LIN_2nd

ARM_LIN_C

WD40

PF23568 ARM_LIN 11-264 aa PF04564 U-box 492-562 aa PF23654 ARM_LIN_2nd 632-793 aa PF23628 ARM_LIN_C 794-1155 aa PF00400 WD40 1218-1251 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794843.1`	Pfam	`PF23568`	ARM_LIN	Repeat	11	264	3.1e-71	240.0	E3 ubiquitin-protein ligase LIN-like, ARM repeat
`XP_057794843.1`	Pfam	`PF04564`	U-box	Domain	492	562	6.2e-15	55.8	U-box domain
`XP_057794843.1`	Pfam	`PF23654`	ARM_LIN_2nd	Repeat	632	793	2.2e-58	197.2	E3 ubiquitin-protein ligase LIN-like, ARM repeat
`XP_057794843.1`	Pfam	`PF23628`	ARM_LIN_C	Repeat	794	1155	4.3e-105	352.4	Putative E3 ubiquitin-protein ligase LIN, ARM-like domain
`XP_057794843.1`	Pfam	`PF00400`	WD40	Repeat	1218	1251	4.3e-15	56.2	WD domain, G-beta repeat
`XP_057794843.1`	Pfam	`PF00400`	WD40	Repeat	1433	1462	4.3e-15	56.2	WD domain, G-beta repeat
`XP_057794844.1`	Pfam	`PF23568`	ARM_LIN	Repeat	11	264	3.1e-71	240.0	E3 ubiquitin-protein ligase LIN-like, ARM repeat
`XP_057794844.1`	Pfam	`PF04564`	U-box	Domain	492	562	6.2e-15	55.8	U-box domain
`XP_057794844.1`	Pfam	`PF23654`	ARM_LIN_2nd	Repeat	632	793	2.2e-58	197.2	E3 ubiquitin-protein ligase LIN-like, ARM repeat
`XP_057794844.1`	Pfam	`PF23628`	ARM_LIN_C	Repeat	794	1155	4.3e-105	352.4	Putative E3 ubiquitin-protein ligase LIN, ARM-like domain
`XP_057794844.1`	Pfam	`PF00400`	WD40	Repeat	1218	1251	4.3e-15	56.2	WD domain, G-beta repeat
`XP_057794844.1`	Pfam	`PF00400`	WD40	Repeat	1433	1462	4.3e-15	56.2	WD domain, G-beta repeat
`XP_057794845.1`	Pfam	`PF23568`	ARM_LIN	Repeat	11	264	3.1e-71	240.0	E3 ubiquitin-protein ligase LIN-like, ARM repeat
`XP_057794845.1`	Pfam	`PF04564`	U-box	Domain	492	562	6.2e-15	55.8	U-box domain
`XP_057794845.1`	Pfam	`PF23654`	ARM_LIN_2nd	Repeat	632	793	2.2e-58	197.2	E3 ubiquitin-protein ligase LIN-like, ARM repeat
`XP_057794845.1`	Pfam	`PF23628`	ARM_LIN_C	Repeat	794	1155	4.3e-105	352.4	Putative E3 ubiquitin-protein ligase LIN, ARM-like domain
`XP_057794845.1`	Pfam	`PF00400`	WD40	Repeat	1218	1251	4.3e-15	56.2	WD domain, G-beta repeat
`XP_057794845.1`	Pfam	`PF00400`	WD40	Repeat	1433	1462	4.3e-15	56.2	WD domain, G-beta repeat
`XP_057794846.1`	Pfam	`PF23568`	ARM_LIN	Repeat	11	264	2.7e-71	240.2	E3 ubiquitin-protein ligase LIN-like, ARM repeat
`XP_057794846.1`	Pfam	`PF04564`	U-box	Domain	492	562	5.2e-15	56.1	U-box domain
`XP_057794846.1`	Pfam	`PF23654`	ARM_LIN_2nd	Repeat	632	793	1.9e-58	197.4	E3 ubiquitin-protein ligase LIN-like, ARM repeat
`XP_057794846.1`	Pfam	`PF23628`	ARM_LIN_C	Repeat	794	1155	3.6e-105	352.7	Putative E3 ubiquitin-protein ligase LIN, ARM-like domain
`XP_057794846.1`	Pfam	`PF00400`	WD40	Repeat	1218	1251	1.3e-10	42.0	WD domain, G-beta repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057938861.1
CCATCATGCCATATTGCTGTCTTAATTAAGCTATGCAGAGAATTAATCTTATGCTAATGACGGAATCCACGCCTAATCTCAAGGCTAATTCAAACGCCGGCCCAAGCCGGCTTTCATTCATTTTTATTGCCCACCCATTGTGCATGAACAACACCTTTCATTAAAACTTGTTTGAGAGACTCAATTTATCAAAAAACATGACATAAAAAATCAAAATAATAGTAAAGTATATTAATTTTTTTCTATTAAAAAATCAGATT...

XM_057938860.1
AAGCCTTTCGGATTCTCAATATTTGATTCTGCAAATTACTGCTTCTATTCTCTCTATTAGCTTTTTTTCACACACAACACAGTTTCTGTTCGCTAATTTTACTTTTTCAAATATTATATTTCCATTAGGTTGGCAGTAATGGAGTTTTGAACTGCTCTTCATCTTCTTCCTGAAAGGAAAGGAAAAGAAAGAAAGAAACTAGGAGTAATGGCTGGTAACCATAGGTTTAAAATGGAAGCAAATGATATAGTTGGATCACT...

CDS

4 records

下载 CDS FASTA

LOC131011093
ATGGCTGGTAACCATAGGTTTAAAATGGAAGCAAATGATATAGTTGGATCACTGACCTCCATTGTTGGGAGTTTCATCCAAGATAGACTGATAGACAAAGAGCAGAGGCTCCGACACAAGGAGCAGTGCGCGGAGAGATTAGCAGCTGAGAACGGAAGCCCTCACAACGACACAGAGGTCCGTTACTCTGATCAAGCAGTTCTAGCAAATCTTGACTGGGGGATCGATGCCCTTGAAGAGGCGATCAGCACTTCCCATGT...

Protein

4 records

下载 Protein FASTA

XP_057794843.1
MAGNHRFKMEANDIVGSLTSIVGSFIQDRLIDKEQRLRHKEQCAERLAAENGSPHNDTEVRYSDQAVLANLDWGIDALEEAISTSHVETKMARLDYAEKMLQVCALLNSTQQTAGVPNSYLSAWAHLNLSYLLKLRNESHNAVLHILEMFIVEPFFSRIDFAPELWKSIFLPHMSSILGWYTEERKSIVMDVIPDSSDLSFTVDFDESLLLSVRPEQAERIQQLEQLYGQSLDENTRLYAKHYKECMNYDAATSRRVVPM...

XP_057794844.1
MAGNHRFKMEANDIVGSLTSIVGSFIQDRLIDKEQRLRHKEQCAERLAAENGSPHNDTEVRYSDQAVLANLDWGIDALEEAISTSHVETKMARLDYAEKMLQVCALLNSTQQTAGVPNSYLSAWAHLNLSYLLKLRNESHNAVLHILEMFIVEPFFSRIDFAPELWKSIFLPHMSSILGWYTEERKSIVMDVIPDSSDLSFTVDFDESLLLSVRPEQAERIQQLEQLYGQSLDENTRLYAKHYKECMNYDAATSRRVVPM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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