Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004180`

染色体: Chr02 坐标: 64095297-64100643 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004180`
名称	SmilChr02G004180
描述	uncharacterized SmilChr02G004180
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	64095297 - 64100643 / `-`

ID 对照

NCBI Gene ID	`LOC131011103`
GeneID	`131011103`
locus_tag	`-`
NCBI Name	`LOC131011103`
原始查询	`SmilChr02G004180`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Transcription elongation factor (TFIIS) family protein [Source:NCBI gene (formerly Entrezgene);Acc:828521]; symbol=AT4G24200; hit=AT4G24200; species=arabidopsis; confidence=low
产物	Transcription elongation factor (TFIIS) family protein [Source:NCBI gene (formerly Entrezgene);Acc:828521]; symbol=AT4G24200; hit=AT4G24200; species=arabidopsis; confidence=low
Arabidopsis	`AT4G24200` (AT4G24200) Transcription elongation factor (TFIIS) family protein [Source:NCBI gene (formerly Entrezgene);Acc:828521] identity=32.6; qcov=0.561; evalue=2.5e-46; confidence=low
Rice	`Os06g0631300` - identity=30.5; qcov=0.569; evalue=1.98e-39; confidence=low
GO	-
KEGG	-
Pfam	PF08711 (Med26)
InterPro	-
eggNOG	-
NR	GeneID:131011103

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057794856.1`
2	Chromosome	染色体	0.00000	`XP_057794856.1`
3	Centromere	着丝粒	0.00000	`XP_057794856.1`
4	Chromatin	染色质	0.00000	`XP_057794856.1`
5	Telomere	端粒	0.00000	`XP_057794856.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:64096111`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr2:64096184`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B6,C63,D2
`Chr2:64096954`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B36,B46,C3
`Chr2:64097087`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B21,B34,B87,C19,C36
`Chr2:64097113`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr2:64097142`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr2:64097148`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B124,B138,B69,C25
`Chr2:64097164`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B138
`Chr2:64097235`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr2:64097443`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B68,B98
`Chr2:64097620`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr2:64097719`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B107,B140,C12

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794856.1

1002 aa

501

1002

Med26

PF08711 Med26 100-150 aa

XP_057794857.1

1002 aa

501

1002

Med26

PF08711 Med26 100-150 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794856.1`	Pfam	`PF08711`	Med26	Domain	100	150	2.2e-07	31.3	TFIIS helical bundle-like domain
`XP_057794857.1`	Pfam	`PF08711`	Med26	Domain	100	150	2.2e-07	31.3	TFIIS helical bundle-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057938873.1
GAGACACGAACAAGAATTACATAACATTCATTAGTCATTACACTTCAAACAACTAATAAATTATAAAAATAGGGTTTTCCATAACCAATTTTTATTTTTCCTCAATTTTTCTGATTATTCTTTTTTATATTCCGACGAAAATAATTTTTGGGGGCGCTCAACCTCTGGGAAATTGGAGCTCTTGGTTGGAGTTGAAGACGAGCTGAAGCCTTTGAAATCGTGACTTTTTTTACAACTCCAGAAAGGGGTCTATGCGCACT...

XM_057938874.1
CATAACATTCATTAGTCATTACACTTCAAACAACTAATAAATTATAAAAATAGGGTTTTCCATAACCAATTTTTATTTTTCCTCAATTTTTCTGATTATTCTTTTTTATATTCCGACGAAAATAATTTTTGGGGGCGCTCAACCTCTGGGAAATTGGAGCTCTTGGTTGGAGTTGAAGACGAGCTGAAGCCTTTGAAATCGTGACTTTTTTTACAACTCCAGAAAGGGGTCTATGCGCACTCTCTGTGTTTTGAAGACGC...

CDS

2 records

下载 CDS FASTA

LOC131011103
ATGACACTAGACGACTTCTTTACCTTGACTGAGATGAATAATGGGCTTGCAGCCCCTTCTCGAGTCAGGGAACTTATGGCTGTTATGGAGAAAGAAAGAAATTGTACGGTGAAGAATGCGGCTGATTCGACAAGGCAGTGGTCTGCAGTTGCAAGTGCTATAGTTGCCACTGAGAACAAGGAGTGTCTTGATCTTTTTCTTCAGTTAGATGGCCTCAACTTCATCTCCAAGTGGTTGAAGGATGCCCAGAAGCTTGATGA...

Protein

2 records

下载 Protein FASTA

XP_057794856.1
MTLDDFFTLTEMNNGLAAPSRVRELMAVMEKERNCTVKNAADSTRQWSAVASAIVATENKECLDLFLQLDGLNFISKWLKDAQKLDDDTNGSFVEESLTHLLRALEKLDVDHEKLLASGIWETVQNLLMHNCSRVQDKARALFESWKTKIDSTTSAPDVDKAGASTVNEPGKSDNTERGIGHSESPLRDASICQENPVNTKGHELDNPVLSTSSNDALNHEKVESANNVDKSVNLPIRNEGSLHHVTSSSLQASSTEPPL...

XP_057794857.1
MTLDDFFTLTEMNNGLAAPSRVRELMAVMEKERNCTVKNAADSTRQWSAVASAIVATENKECLDLFLQLDGLNFISKWLKDAQKLDDDTNGSFVEESLTHLLRALEKLDVDHEKLLASGIWETVQNLLMHNCSRVQDKARALFESWKTKIDSTTSAPDVDKAGASTVNEPGKSDNTERGIGHSESPLRDASICQENPVNTKGHELDNPVLSTSSNDALNHEKVESANNVDKSVNLPIRNEGSLHHVTSSSLQASSTEPPL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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