当前解析结果
SmilChr02G004186| 统一新 Gene ID | SmilChr02G004186 |
|---|---|
| 名称 | SmilChr02G004186 |
| 描述 | protein AMEIOTIC 1 homolog |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 64190591 - 64195426 / + |
| NCBI Gene ID | LOC131009881 |
|---|---|
| GeneID | 131009881 |
| locus_tag | - |
| NCBI Name | LOC131009881 |
| 原始查询 | SmilChr02G004186 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein AMEIOTIC 1 homolog |
| 产物 | protein AMEIOTIC 1 homolog |
| Arabidopsis | AT5G51330 (SWI1)SWITCH1 [Source:NCBI gene (formerly Entrezgene);Acc:835207] identity=37; qcov=0.561; evalue=1.07e-70; confidence=medium |
| Rice | Os03g0650400 (OsAM1)- identity=38.8; qcov=0.486; evalue=2.04e-62; confidence=medium |
| GO | GO:0007131 (reciprocal meiotic recombination); GO:0051177 (meiotic sister chromatid cohesion); GO:0051321 (meiotic cell cycle) |
| KEGG | - |
| Pfam | PF25874 (WHD_plant_repro); PF31005 (DYAD_N); PF31006 (DYAD_CC) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009881 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057793268.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057793268.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057793268.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057793268.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057793268.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:64190596 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:64190631 |
C |
CT |
1bp_insertion | frameshift_variant | 91 | A16,A18,A23,A25,A6,B106,B108,B109,B11,B119,B12,B121,B123,B124,B126,B128,B13,B133,B137,B14,B16,B18,B19,B20,B26,B29,B30,B31,B32,B34,B41,B5,B50,B51,B58,B6,B60,B64,B66,B67,B69,B72,B73,B74,B75,B78,B8,B82,B86,B87,B90,B91,B92,B99,C10,C11,C17,C18,C21,C23,C24,C25,C28,C36,C37,C38,C46,C47,C48,C5,C50,C52,C54,C56,C63,C65,C69,C70,C72,C73,C75,C76,C77,C79,C8,C80,C81,C9,D10,D3,D8 |
Chr2:64190632 |
G |
GCA |
2bp_insertion | frameshift_variant | 91 | A16,A18,A23,A25,A6,B106,B108,B109,B11,B119,B12,B121,B123,B124,B126,B128,B13,B133,B137,B14,B16,B18,B19,B20,B26,B29,B30,B31,B32,B34,B41,B5,B50,B51,B58,B6,B60,B64,B66,B67,B69,B72,B73,B74,B75,B78,B8,B82,B86,B87,B90,B91,B92,B99,C10,C11,C17,C18,C21,C23,C24,C25,C28,C36,C37,C38,C46,C47,C48,C5,C50,C52,C54,C56,C63,C65,C69,C70,C72,C73,C75,C76,C77,C79,C8,C80,C81,C9,D10,D3,D8 |
Chr2:64190653 |
TCG |
T |
2bp_deletion | frameshift_variant | 1 | C83 |
Chr2:64190653 |
TCG |
T |
2bp_deletion | CDS_variant | 1 | C83 |
Chr2:64190869 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:64190878 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C36 |
Chr2:64191169 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C7 |
Chr2:64191198 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C1 |
Chr2:64191198 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr2:64191237 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C29,C6 |
Chr2:64191355 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793268.1PF31005
DYAD_N 52-144 aa
PF25874
WHD_plant_repro 366-448 aa
PF31006
DYAD_CC 528-679 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793268.1 |
Pfam | PF31005 |
DYAD_N | Domain | 52 | 144 | 1.7e-35 | 122.0 | DYAD/AMEIOTIC1 N-terminal domain |
XP_057793268.1 |
Pfam | PF25874 |
WHD_plant_repro | Domain | 366 | 448 | 2e-26 | 92.4 | Winged helix-turn-helix domain in plant reproductive proteins |
XP_057793268.1 |
Pfam | PF31006 |
DYAD_CC | Coiled-coil | 528 | 679 | 2.5e-35 | 122.9 | DYAD/AMEIOTIC1 Coiled-coil |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。