当前解析结果
SmilChr02G004187| 统一新 Gene ID | SmilChr02G004187 |
|---|---|
| 名称 | SmilChr02G004187 |
| 描述 | uncharacterized SmilChr02G004187 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 64196032 - 64197285 / - |
| NCBI Gene ID | LOC131009882 |
|---|---|
| GeneID | 131009882 |
| locus_tag | - |
| NCBI Name | LOC131009882 |
| 原始查询 | SmilChr02G004187 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | exosome complex exonuclease [Source:NCBI gene (formerly Entrezgene);Acc:832625]; symbol=AT5G25500; hit=AT5G25500; species=arabidopsis; confidence=high |
| 产物 | exosome complex exonuclease [Source:NCBI gene (formerly Entrezgene);Acc:832625]; symbol=AT5G25500; hit=AT5G25500; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G25500 (AT5G25500)exosome complex exonuclease [Source:NCBI gene (formerly Entrezgene);Acc:832625] identity=45.5; qcov=0.964; evalue=8.65e-117; confidence=high |
| Rice | Os11g0207300- identity=34.7; qcov=1.01; evalue=9.75e-66; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009882 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057793269.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057793269.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057793269.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057793269.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057793269.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:64196074 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
Chr2:64196113 |
GC |
G |
1bp_deletion | frameshift_variant | 2 | B13,B71 |
Chr2:64196113 |
GC |
G |
1bp_deletion | CDS_variant | 2 | B13,B71 |
Chr2:64196125 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B58,B82,C18,C9 |
Chr2:64196179 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B105,B29,C32,C39,C68 |
Chr2:64196251 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B138,B5,B65,C28 |
Chr2:64196328 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C66 |
Chr2:64196394 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B22,C2 |
Chr2:64196394 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B22,C2 |
Chr2:64196435 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr2:64196461 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B105,C32 |
Chr2:64196551 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B86 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。