Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004189`

染色体: Chr02 坐标: 64203209-64220085 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004189`
名称	SmilChr02G004189
描述	vacuolar protein sorting-associated protein 35B-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	64203209 - 64220085 / `-`

ID 对照

NCBI Gene ID	`LOC131011109`
GeneID	`131011109`
locus_tag	`-`
NCBI Name	`LOC131011109`
原始查询	`SmilChr02G004189`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	vacuolar protein sorting-associated protein 35B-like
产物	vacuolar protein sorting-associated protein 35B-like
Arabidopsis	`AT1G75850` (VPS35B) VPS35 homolog B [Source:NCBI gene (formerly Entrezgene);Acc:843918] identity=80.6; qcov=1; evalue=0; confidence=high
Rice	`Os03g0801600` - identity=82.8; qcov=1; evalue=0; confidence=high
GO	GO:0005770 (late endosome); GO:0006886 (intracellular protein transport); GO:0030904 (retromer complex); GO:0030906 (retromer, cargo-selective complex); GO:0042147 (retrograde transport, endosome to Golgi)
KEGG	smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage)); smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF03635 (Vps35)
InterPro	-
eggNOG	-
NR	GeneID:131011109

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057794867.1`
2	Cytosol	细胞质基质	1.00000	`XP_057794867.1`
3	Nucleus	细胞核	0.80000	`XP_057794867.1`
4	Nucleoplasm	核质	0.80000	`XP_057794868.1`
5	Chromosome	染色体	0.00000	`XP_057794867.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:64203773`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B138,C42
`Chr2:64204008`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C7
`Chr2:64204356`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr2:64204516`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:64204562`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr2:64204693`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr2:64204732`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B12,B86
`Chr2:64207872`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C64,C66
`Chr2:64208447`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A19,C58,C7
`Chr2:64208513`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B64
`Chr2:64210677`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B127
`Chr2:64211637`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B97

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794867.1

791 aa

396

791

Vps35

PF03635 Vps35 13-748 aa

XP_057794868.1

738 aa

369

738

Vps35

PF03635 Vps35 13-695 aa

XP_057794869.1

726 aa

363

726

Vps35

PF03635 Vps35 1-683 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794867.1`	Pfam	`PF03635`	Vps35	Repeat	13	748	6.3e-286	951.4	Vacuolar protein sorting-associated protein 35
`XP_057794868.1`	Pfam	`PF03635`	Vps35	Repeat	13	695	6.5e-262	872.0	Vacuolar protein sorting-associated protein 35
`XP_057794869.1`	Pfam	`PF03635`	Vps35	Repeat	1	683	9.6e-262	871.4	Vacuolar protein sorting-associated protein 35

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057938884.1
TTAATCTATTTTCGTCAAAAACCTAATAAGAGTAAAATAACTCTCGTAATATAATTGGACGTCTACGGTGTTCAGAGCAAATGAATAAAAATATTACTAAAATTTTAAAAATTTAAGTTAAAATTAGAGCATGATGGGGGAATGTACGCCTGGCGATTCCATCTGAATCCTGTTTGGAGAGAGAGAGAGAGAAAGAAATGATGATATCAAACGGAATCGAAGACGAGGAGAAATGGCTCGCCGAAGGCATCGCCGGAATT...

XM_057938885.1
GCATCGCCGGAATTCAGCACAACGCGTTCTACTTGCATCGAGCTTTGGACTCCAATAATCTCCGGGAAGCTCTCAAATACTCCGCGCAATTGTTATCGGAGCTTCGAACTTCGAGGCTGTCGCCCCACAAATATTATGAGCTCTGTAAAGTTCTTCGTTCCATTTATAAATATGCGGGCTTTTGACGAATTGAGGAGGTTGGAGATTTTCTTCAAAGAAGAAGATCGGCACGGCTGTCCAGTGATTGATCTATATGAACT...

CDS

3 records

下载 CDS FASTA

LOC131011109
ATGATGATATCAAACGGAATCGAAGACGAGGAGAAATGGCTCGCCGAAGGCATCGCCGGAATTCAGCACAACGCGTTCTACTTGCATCGAGCTTTGGACTCCAATAATCTCCGGGAAGCTCTCAAATACTCCGCGCAATTGTTATCGGAGCTTCGAACTTCGAGGCTGTCGCCCCACAAATATTATGAGCTCTATATGCGGGCTTTTGACGAATTGAGGAGGTTGGAGATTTTCTTCAAAGAAGAAGATCGGCACGGCTG...

LOC131011109
ATGAGCTCTGTAAAGTTCTTCGTTCCATTTATAAATATGCGGGCTTTTGACGAATTGAGGAGGTTGGAGATTTTCTTCAAAGAAGAAGATCGGCACGGCTGTCCAGTGATTGATCTATATGAACTTGTTCAGCATGCCGGGAACATCTTGCCTAGATTATATCTTCTATGCACAGTTGGATCTGTTTATATAAAATCAAAGGAGGCTCCTGCTAAGGATATTCTCAGGGATCTTGTTGAAATGTGTCGTGCTGTTCAACA...

Protein

3 records

下载 Protein FASTA

XP_057794867.1
MMISNGIEDEEKWLAEGIAGIQHNAFYLHRALDSNNLREALKYSAQLLSELRTSRLSPHKYYELYMRAFDELRRLEIFFKEEDRHGCPVIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDILRDLVEMCRAVQHPVRGLFLRSYLAQVSRDKLPDIGSEYEGEGDTVMDAVEFVLQNFTEMNKLWVRMQHQGPHREKEKLEKERNELRDLVGKNLHVLSQIEGIDLEMYRDTVLPSVLEQIVNCKDELAQYYLM...

XP_057794868.1
MSSVKFFVPFINMRAFDELRRLEIFFKEEDRHGCPVIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDILRDLVEMCRAVQHPVRGLFLRSYLAQVSRDKLPDIGSEYEGEGDTVMDAVEFVLQNFTEMNKLWVRMQHQGPHREKEKLEKERNELRDLVGKNLHVLSQIEGIDLEMYRDTVLPSVLEQIVNCKDELAQYYLMDCIIQVFPDEYHLQTLETLLSACPQLQPTVDLKTVLSQLMERLSNYASLNPEL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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