Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004225`

染色体: Chr02 坐标: 64453264-64462385 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004225`
名称	SmilChr02G004225
描述	uncharacterized SmilChr02G004225
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	64453264 - 64462385 / `-`

ID 对照

NCBI Gene ID	`LOC131011171`
GeneID	`131011171`
locus_tag	`-`
NCBI Name	`LOC131011171`
原始查询	`SmilChr02G004225`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	lipid transporter [Source:NCBI gene (formerly Entrezgene);Acc:830656]; symbol=AT5G07630; hit=AT5G07630; species=arabidopsis; confidence=high
产物	lipid transporter [Source:NCBI gene (formerly Entrezgene);Acc:830656]; symbol=AT5G07630; hit=AT5G07630; species=arabidopsis; confidence=high
Arabidopsis	`AT5G07630` (AT5G07630) lipid transporter [Source:NCBI gene (formerly Entrezgene);Acc:830656] identity=65.8; qcov=1; evalue=0; confidence=high
Rice	`Os07g0486100` - identity=63.8; qcov=0.416; evalue=4.64e-72; confidence=low
GO	GO:0005789 (endoplasmic reticulum membrane); GO:0006488 (dolichol-linked oligosaccharide biosynthetic process); GO:0034203 (glycolipid translocation)
KEGG	-
Pfam	PF04506 (Rft-1)
InterPro	-
eggNOG	-
NR	GeneID:131011171

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057794950.1`
2	Endoplasmic reticulum	内质网	0.80000	`XP_057794953.1`
3	Endoplasmic reticulum membrane	内质网膜	0.40000	`XP_057794953.1`
4	Vesicle	囊泡	0.20000	`XP_057794950.1`
5	Nucleus	细胞核	0.00000	`XP_057794953.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:64453550`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:64453594`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr2:64453773`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A7,A8,B21,B40,C53
`Chr2:64453808`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C16
`Chr2:64453815`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr2:64453820`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C56,C65
`Chr2:64453889`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B69,D7
`Chr2:64455710`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A24
`Chr2:64455723`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A10,B19,B28
`Chr2:64455779`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C16
`Chr2:64456916`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B126,B95,C11,C47,C69
`Chr2:64456947`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794950.1

526 aa

263

526

Rft-1

PF04506 Rft-1 19-519 aa

XP_057794952.1

526 aa

263

526

Rft-1

PF04506 Rft-1 19-519 aa

XP_057794953.1

517 aa

258

517

Rft-1

PF04506 Rft-1 19-510 aa

XP_057794954.1

425 aa

212

425

Rft-1

PF04506 Rft-1 2-418 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794950.1`	Pfam	`PF04506`	Rft-1	Family	19	519	2.1e-137	459.7	Rft protein
`XP_057794952.1`	Pfam	`PF04506`	Rft-1	Family	19	519	2.1e-137	459.7	Rft protein
`XP_057794953.1`	Pfam	`PF04506`	Rft-1	Family	19	510	1.5e-126	423.9	Rft protein
`XP_057794954.1`	Pfam	`PF04506`	Rft-1	Family	2	418	3e-110	370.2	Rft protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057938969.1
TGGCGAATTAATCCACGTAAATTTCATTTCATCAATTCGATGATCAAAAAGAATTTGAAAGACGAAATTGCAAAAAATTGAAAAGACGATGGTTTAGTTTACCACAATCCAAAAAGCCGATATTTTAATTTTCAGAACAAACGGAGTCGAGTTGGACTTAGCTCAAGACGGCCGCTGTGATTGTAATTCCGAGCACTGCAATCGCTTCGCTGTTCGAAGTTTCCAATGCGTGGTAGAAGTTGATGATACGGTTCTAGAAC...

XM_057938970.1
TCAAAAAGAATTTGAAAGACGAAATTGCAAAAAATTGAAAAGACGATGGTTTAGTTTACCACAATCCAAAAAGCCGATATTTTAATTTTCAGAACAAACGGAGTCGAGTTGGACTTAGCTCAAGACGGCCGCTGTGATTGTAATTCCGAGCACTGCAATCGCTTCGCTGTTCGAAGTTTCCAATGCGTGGTAGAAGTTGATGATACGGTTCTAGAACCAAAGCATAGAGACTAAAAGCAAAGGGGGAAAAATGGTTTCAG...

CDS

4 records

下载 CDS FASTA

LOC131011171
ATGGTTTCAGAGATGTCGAGCGCGGATGGCGACACAGCTGCGAGTTTGCAGCGCACTTTCAAATACTTATTAGCTACGCAGTTTCTGTCGAGGGGAATCCCATTCATATTCAACTCCTGGATTGTCAGACACTTATCTGAGGAAGATTATGCGGTTTATGCCGTGCAGTTCCATTTGTTTATTACTTGCATATTGTTTCTGAGTAGAGAGGGGTTCCGGAGAGCCTGCATGCGGGCAGATATCAGATGTGATGGTGCTTC...

Protein

4 records

下载 Protein FASTA

XP_057794950.1
MVSEMSSADGDTAASLQRTFKYLLATQFLSRGIPFIFNSWIVRHLSEEDYAVYAVQFHLFITCILFLSREGFRRACMRADIRCDGASATGANAAKLLKVAWMTFPIGILVTLGACIFVFWWQDLSYSSPYAHAILINGFACILELLAEPFYILSQTLVLLRLRLLAETAATLSRCIITYILILKQPSLEKAVVFALSQVAYGAFIFLGYWGYFLLFQVYKYSVLFPFRVGNAMSYDRPLANMCMIFTLQSFRKLILQEGE...

XP_057794952.1
MVSEMSSADGDTAASLQRTFKYLLATQFLSRGIPFIFNSWIVRHLSEEDYAVYAVQFHLFITCILFLSREGFRRACMRADIRCDGASATGANAAKLLKVAWMTFPIGILVTLGACIFVFWWQDLSYSSPYAHAILINGFACILELLAEPFYILSQTLVLLRLRLLAETAATLSRCIITYILILKQPSLEKAVVFALSQVAYGAFIFLGYWGYFLLFQVYKYSVLFPFRVGNAMSYDRPLANMCMIFTLQSFRKLILQEGE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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