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TF 结合位点 TF 靶基因 EMS 突变
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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G004226

染色体: Chr02 坐标: 64478365-64486743 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G004226
名称SmilChr02G004226
描述RNA pseudouridine synthase 2, chloroplastic
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向64478365 - 64486743 / +

ID 对照

NCBI Gene IDLOC131012972
GeneID131012972
locus_tag-
NCBI NameLOC131012972
原始查询SmilChr02G004226

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述RNA pseudouridine synthase 2, chloroplastic
产物RNA pseudouridine synthase 2%2C chloroplastic
ArabidopsisAT1G76050 (AT1G76050)
Pseudouridine synthase family protein [Source:NCBI gene (formerly Entrezgene);Acc:843937]
identity=63.5; qcov=0.915; evalue=4.54e-176; confidence=high
RiceOs06g0717400
-
identity=62.2; qcov=0.866; evalue=1.05e-166; confidence=high
GOGO:0001522 (pseudouridine synthesis); GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0008270 (zinc ion binding); GO:0009982 (pseudouridine synthase activity)
KEGG-
PfamPF00849 (PseudoU_synth_2); PF01479 (S4); PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF14432 (DYW_deaminase); PF20431 (E_motif); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131012972

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057796942.1
2 Mitochondrion 线粒体 0.80000 XP_057796938.1
3 Nucleus 细胞核 0.00000 XP_057796938.1
4 Chromosome 染色体 0.00000 XP_057796938.1
5 Centromere 着丝粒 0.00000 XP_057796938.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:64478531 C T EMS_canonical_SNV CDS_variant 3 A10,B19,B28
Chr2:64478533 C T EMS_canonical_SNV CDS_variant 3 A10,B19,B28
Chr2:64478566 C T EMS_canonical_SNV CDS_variant 4 B61,C43,C55,C65
Chr2:64478685 G A EMS_canonical_SNV CDS_variant 3 B108,B50,C23
Chr2:64479040 G A EMS_canonical_SNV CDS_variant 3 B1,B113,C51
Chr2:64479061 G A EMS_canonical_SNV CDS_variant 3 A10,B19,B28
Chr2:64479112 C T EMS_canonical_SNV CDS_variant 1 D7
Chr2:64479653 C T EMS_canonical_SNV CDS_variant 1 C45
Chr2:64479716 G A EMS_canonical_SNV CDS_variant 1 C16
Chr2:64480012 C T EMS_canonical_SNV CDS_variant 1 B94
Chr2:64480086 C T EMS_canonical_SNV CDS_variant 1 C16
Chr2:64480108 G A EMS_canonical_SNV CDS_variant 1 B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796938.1
1134 aa
N
1
567
1134
S4
PseudoU_synth_2
PPR
PPR
PPR_2
PPR
PPR
PPR
TPR_24
PPR
PPR_3
PPR_2
PPR
PPR
PPR_2
PPR_3
PPR
PPR_3
PPR
PPR
E_motif
DYW_deaminase
C
PF01479 S4 78-124 aa PF00849 PseudoU_synth_2 151-289 aa PF01535 PPR 456-481 aa PF01535 PPR 529-555 aa PF13041 PPR_2 554-601 aa PF01535 PPR 557-587 aa PF01535 PPR 592-622 aa PF01535 PPR 663-688 aa PF23276 TPR_24 693-819 aa PF01535 PPR 695-717 aa PF13812 PPR_3 714-774 aa PF13041 PPR_2 726-772 aa PF01535 PPR 728-758 aa PF01535 PPR 801-827 aa PF13041 PPR_2 827-874 aa PF13812 PPR_3 827-874 aa PF01535 PPR 829-858 aa PF13812 PPR_3 853-910 aa PF01535 PPR 864-892 aa PF01535 PPR 902-925 aa PF20431 E_motif 944-1006 aa PF14432 DYW_deaminase 1042-1134 aa
XP_057796939.1
838 aa
N
1
419
838
PPR
PPR
PPR_2
PPR
PPR
PPR
TPR_24
PPR
PPR_3
PPR_2
PPR
PPR
PPR_2
PPR_3
PPR
PPR_3
PPR
PPR
E_motif
DYW_deaminase
C
PF01535 PPR 160-185 aa PF01535 PPR 233-259 aa PF13041 PPR_2 258-305 aa PF01535 PPR 261-291 aa PF01535 PPR 296-326 aa PF01535 PPR 367-392 aa PF23276 TPR_24 397-523 aa PF01535 PPR 399-421 aa PF13812 PPR_3 418-478 aa PF13041 PPR_2 430-476 aa PF01535 PPR 432-462 aa PF01535 PPR 505-531 aa PF13041 PPR_2 531-578 aa PF13812 PPR_3 531-578 aa PF01535 PPR 533-562 aa PF13812 PPR_3 557-614 aa PF01535 PPR 568-596 aa PF01535 PPR 606-629 aa PF20431 E_motif 648-710 aa PF14432 DYW_deaminase 746-838 aa
XP_057796941.1
838 aa
N
1
419
838
PPR
PPR
PPR_2
PPR
PPR
PPR
TPR_24
PPR
PPR_3
PPR_2
PPR
PPR
PPR_2
PPR_3
PPR
PPR_3
PPR
PPR
E_motif
DYW_deaminase
C
PF01535 PPR 160-185 aa PF01535 PPR 233-259 aa PF13041 PPR_2 258-305 aa PF01535 PPR 261-291 aa PF01535 PPR 296-326 aa PF01535 PPR 367-392 aa PF23276 TPR_24 397-523 aa PF01535 PPR 399-421 aa PF13812 PPR_3 418-478 aa PF13041 PPR_2 430-476 aa PF01535 PPR 432-462 aa PF01535 PPR 505-531 aa PF13041 PPR_2 531-578 aa PF13812 PPR_3 531-578 aa PF01535 PPR 533-562 aa PF13812 PPR_3 557-614 aa PF01535 PPR 568-596 aa PF01535 PPR 606-629 aa PF20431 E_motif 648-710 aa PF14432 DYW_deaminase 746-838 aa
XP_057796942.1
469 aa
N
1
234
469
S4
PseudoU_synth_2
C
PF01479 S4 78-124 aa PF00849 PseudoU_synth_2 151-346 aa
XP_057796943.1
436 aa
N
1
218
436
S4
PseudoU_synth_2
C
PF01479 S4 78-124 aa PF00849 PseudoU_synth_2 151-346 aa
XP_057796944.1
434 aa
N
1
217
434
S4
PseudoU_synth_2
C
PF01479 S4 78-124 aa PF00849 PseudoU_synth_2 151-346 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057796938.1 Pfam PF01479 S4 Domain 78 124 1.5e-08 35.0 S4 domain
XP_057796938.1 Pfam PF00849 PseudoU_synth_2 Family 151 289 7.5e-16 59.4 RNA pseudouridylate synthase
XP_057796938.1 Pfam PF01535 PPR Repeat 456 481 2.9e-64 209.6 PPR repeat
XP_057796938.1 Pfam PF01535 PPR Repeat 529 555 2.9e-64 209.6 PPR repeat
XP_057796938.1 Pfam PF13041 PPR_2 Repeat 554 601 2.6e-60 201.0 PPR repeat family
XP_057796938.1 Pfam PF01535 PPR Repeat 557 587 2.9e-64 209.6 PPR repeat
XP_057796938.1 Pfam PF01535 PPR Repeat 592 622 2.9e-64 209.6 PPR repeat
XP_057796938.1 Pfam PF01535 PPR Repeat 663 688 2.9e-64 209.6 PPR repeat
XP_057796938.1 Pfam PF23276 TPR_24 Repeat 693 819 1.6e-17 64.4 Pentatricopeptide repeat-containing protein
XP_057796938.1 Pfam PF01535 PPR Repeat 695 717 2.9e-64 209.6 PPR repeat
XP_057796938.1 Pfam PF13812 PPR_3 Repeat 714 774 5.4e-28 97.6 Pentatricopeptide repeat domain
XP_057796938.1 Pfam PF13041 PPR_2 Repeat 726 772 2.6e-60 201.0 PPR repeat family
XP_057796938.1 Pfam PF01535 PPR Repeat 728 758 2.9e-64 209.6 PPR repeat
XP_057796938.1 Pfam PF01535 PPR Repeat 801 827 2.9e-64 209.6 PPR repeat
XP_057796938.1 Pfam PF13041 PPR_2 Repeat 827 874 2.6e-60 201.0 PPR repeat family
XP_057796938.1 Pfam PF13812 PPR_3 Repeat 827 874 5.4e-28 97.6 Pentatricopeptide repeat domain
XP_057796938.1 Pfam PF01535 PPR Repeat 829 858 2.9e-64 209.6 PPR repeat
XP_057796938.1 Pfam PF13812 PPR_3 Repeat 853 910 5.4e-28 97.6 Pentatricopeptide repeat domain
XP_057796938.1 Pfam PF01535 PPR Repeat 864 892 2.9e-64 209.6 PPR repeat
XP_057796938.1 Pfam PF01535 PPR Repeat 902 925 2.9e-64 209.6 PPR repeat
XP_057796938.1 Pfam PF20431 E_motif Repeat 944 1006 5.4e-26 91.3 E motif
XP_057796938.1 Pfam PF14432 DYW_deaminase Domain 1042 1134 5.3e-43 145.5 DYW family of nucleic acid deaminases
XP_057796939.1 Pfam PF01535 PPR Repeat 160 185 4.3e-66 215.4 PPR repeat
XP_057796939.1 Pfam PF01535 PPR Repeat 233 259 4.3e-66 215.4 PPR repeat
XP_057796939.1 Pfam PF13041 PPR_2 Repeat 258 305 1.1e-61 205.5 PPR repeat family
XP_057796939.1 Pfam PF01535 PPR Repeat 261 291 4.3e-66 215.4 PPR repeat
XP_057796939.1 Pfam PF01535 PPR Repeat 296 326 4.3e-66 215.4 PPR repeat
XP_057796939.1 Pfam PF01535 PPR Repeat 367 392 4.3e-66 215.4 PPR repeat
XP_057796939.1 Pfam PF23276 TPR_24 Repeat 397 523 1.5e-18 67.7 Pentatricopeptide repeat-containing protein
XP_057796939.1 Pfam PF01535 PPR Repeat 399 421 4.3e-66 215.4 PPR repeat
XP_057796939.1 Pfam PF13812 PPR_3 Repeat 418 478 3.1e-29 101.6 Pentatricopeptide repeat domain
XP_057796939.1 Pfam PF13041 PPR_2 Repeat 430 476 1.1e-61 205.5 PPR repeat family
XP_057796939.1 Pfam PF01535 PPR Repeat 432 462 4.3e-66 215.4 PPR repeat
XP_057796939.1 Pfam PF01535 PPR Repeat 505 531 4.3e-66 215.4 PPR repeat
XP_057796939.1 Pfam PF13041 PPR_2 Repeat 531 578 1.1e-61 205.5 PPR repeat family
XP_057796939.1 Pfam PF13812 PPR_3 Repeat 531 578 3.1e-29 101.6 Pentatricopeptide repeat domain
XP_057796939.1 Pfam PF01535 PPR Repeat 533 562 4.3e-66 215.4 PPR repeat
XP_057796939.1 Pfam PF13812 PPR_3 Repeat 557 614 3.1e-29 101.6 Pentatricopeptide repeat domain
XP_057796939.1 Pfam PF01535 PPR Repeat 568 596 4.3e-66 215.4 PPR repeat
XP_057796939.1 Pfam PF01535 PPR Repeat 606 629 4.3e-66 215.4 PPR repeat
XP_057796939.1 Pfam PF20431 E_motif Repeat 648 710 3.4e-26 92.0 E motif
XP_057796939.1 Pfam PF14432 DYW_deaminase Domain 746 838 3.3e-43 146.1 DYW family of nucleic acid deaminases
XP_057796941.1 Pfam PF01535 PPR Repeat 160 185 4.3e-66 215.4 PPR repeat
XP_057796941.1 Pfam PF01535 PPR Repeat 233 259 4.3e-66 215.4 PPR repeat
XP_057796941.1 Pfam PF13041 PPR_2 Repeat 258 305 1.1e-61 205.5 PPR repeat family
XP_057796941.1 Pfam PF01535 PPR Repeat 261 291 4.3e-66 215.4 PPR repeat
XP_057796941.1 Pfam PF01535 PPR Repeat 296 326 4.3e-66 215.4 PPR repeat
XP_057796941.1 Pfam PF01535 PPR Repeat 367 392 4.3e-66 215.4 PPR repeat
XP_057796941.1 Pfam PF23276 TPR_24 Repeat 397 523 1.5e-18 67.7 Pentatricopeptide repeat-containing protein
XP_057796941.1 Pfam PF01535 PPR Repeat 399 421 4.3e-66 215.4 PPR repeat
XP_057796941.1 Pfam PF13812 PPR_3 Repeat 418 478 3.1e-29 101.6 Pentatricopeptide repeat domain
XP_057796941.1 Pfam PF13041 PPR_2 Repeat 430 476 1.1e-61 205.5 PPR repeat family
XP_057796941.1 Pfam PF01535 PPR Repeat 432 462 4.3e-66 215.4 PPR repeat
XP_057796941.1 Pfam PF01535 PPR Repeat 505 531 4.3e-66 215.4 PPR repeat
XP_057796941.1 Pfam PF13041 PPR_2 Repeat 531 578 1.1e-61 205.5 PPR repeat family
XP_057796941.1 Pfam PF13812 PPR_3 Repeat 531 578 3.1e-29 101.6 Pentatricopeptide repeat domain
XP_057796941.1 Pfam PF01535 PPR Repeat 533 562 4.3e-66 215.4 PPR repeat
XP_057796941.1 Pfam PF13812 PPR_3 Repeat 557 614 3.1e-29 101.6 Pentatricopeptide repeat domain
XP_057796941.1 Pfam PF01535 PPR Repeat 568 596 4.3e-66 215.4 PPR repeat
XP_057796941.1 Pfam PF01535 PPR Repeat 606 629 4.3e-66 215.4 PPR repeat
XP_057796941.1 Pfam PF20431 E_motif Repeat 648 710 3.4e-26 92.0 E motif
XP_057796941.1 Pfam PF14432 DYW_deaminase Domain 746 838 3.3e-43 146.1 DYW family of nucleic acid deaminases
XP_057796942.1 Pfam PF01479 S4 Domain 78 124 4.1e-09 36.8 S4 domain
XP_057796942.1 Pfam PF00849 PseudoU_synth_2 Family 151 346 2.1e-26 93.7 RNA pseudouridylate synthase
XP_057796943.1 Pfam PF01479 S4 Domain 78 124 3.7e-09 36.9 S4 domain
XP_057796943.1 Pfam PF00849 PseudoU_synth_2 Family 151 346 1.8e-26 93.9 RNA pseudouridylate synthase
XP_057796944.1 Pfam PF01479 S4 Domain 78 124 3.7e-09 36.9 S4 domain
XP_057796944.1 Pfam PF00849 PseudoU_synth_2 Family 151 346 1.7e-26 94.0 RNA pseudouridylate synthase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA
XM_057940959.1
TGGGGGCCTAGGAGGCTAGGATCACAAAATTCGTGCAACCCGGTTACAAAAATATGGCATAGGCCGCATTGTTTACAATTTTAGAAACGACTTTCGAAATGAGAATGCTGTCCCTTCAATCCTTGTCTTGGTTTTCAGTTAAACCCCAACTCATAAACCCTAGAAGCCCTTCTTTCCGGCAACTCGGAGCCACAACTCATGCTTATTCTAATTCCATTCCGGCCGCGAACTCCGACTCACATGACTTCAGCAAGCAGTCT...
XM_057940960.1
TGGGGGCCTAGGAGGCTAGGATCACAAAATTCGTGCAACCCGGTTACAAAAATATGGCATAGGCCGCATTGTTTACAATTTTAGAAACGACTTTCGAAATGAGAATGCTGTCCCTTCAATCCTTGTCTTGGTTTTCAGTTAAACCCCAACTCATAAACCCTAGAAGCCCTTCTTTCCGGCAACTCGGAGCCACAACTCATGCTTATTCTAATTCCATTCCGGCCGCGAACTCCGACTCACATGACTTCAGCAAGCAGTCT...

CDS

6 records

下载 CDS FASTA
LOC131012972
ATGAGAATGCTGTCCCTTCAATCCTTGTCTTGGTTTTCAGTTAAACCCCAACTCATAAACCCTAGAAGCCCTTCTTTCCGGCAACTCGGAGCCACAACTCATGCTTATTCTAATTCCATTCCGGCCGCGAACTCCGACTCACATGACTTCAGCAAGCAGTCTTCCGCCCTCCCCAACAATTATTCCGGCGTCAAAATTGAGGAAAGGGTGGCATTGGATTCCGGGAAGCTGCGGCTGGACTCATGGATTGCTTCCCGCAT...
LOC131012972
ATGAGAATGCTGTCCCTTCAATCCTTGTCTTGGTTTTCAGTTAAACCCCAACTCATAAACCCTAGAAGCCCTTCTTTCCGGCAACTCGGAGCCACAACTCATGCTTATTCTAATTCCATTCCGGCCGCGAACTCCGACTCACATGACTTCAGCAAGCAGTCTTCCGCCCTCCCCAACAATTATTCCGGCGTCAAAATTGAGGAAAGGGTGGCATTGGATTCCGGGAAGCTGCGGCTGGACTCATGGATTGCTTCCCGCAT...

Protein

6 records

下载 Protein FASTA
XP_057796938.1
MRMLSLQSLSWFSVKPQLINPRSPSFRQLGATTHAYSNSIPAANSDSHDFSKQSSALPNNYSGVKIEERVALDSGKLRLDSWIASRINGISRARVQSSIRSGLVSVNGRVINKASHMVRLGDMVNCTIADLQPLRAEPEDIPLDIVYEDEHVIVVNKPAHLVVHPAPGNATGTLVNGILHHCRLSSISFNPETLPEVDDDSGDEISALSLDQGPGEGIAFGLSEASVRPGIVHRLDKGTSGLLVIAKDEHSHSHLSEQFK...
XP_057796939.1
MIATPGSATQGRARHAVSSWNMSSIVNNKASFHSNSLNPISDCNDTYRPFGQKINFSGIKTEDHIQSNTRKLTIDHCGSTSINWISEDRAHFGIYPDPLHLLSGSTTLLLTHAKQIHAQLLRTSLYDSPHYRTKLLLHYSKYFQFSDAKNLLRCLRLDLFSFTTLINASSKDNDFKTTLSLFHQMFIGGLYPDAHLLPSVIKACAGLLAPRIGKQVHGFSLSSGLSLDPFVESSLIHFYLKCDDIVSAHKVFDNMVGRDV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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