当前解析结果
SmilChr02G004238| 统一新 Gene ID | SmilChr02G004238 |
|---|---|
| 名称 | SmilChr02G004238 |
| 描述 | uncharacterized SmilChr02G004238 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 64558095 - 64560466 / - |
| NCBI Gene ID | LOC131012982 |
|---|---|
| GeneID | 131012982 |
| locus_tag | - |
| NCBI Name | LOC131012982 |
| 原始查询 | SmilChr02G004238 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | OsDNLZ1; symbol=OsDNLZ1; hit=Os06g0724400; species=rice; confidence=high |
| 产物 | OsDNLZ1; symbol=OsDNLZ1; hit=Os06g0724400; species=rice; confidence=high |
| Arabidopsis | AT5G27280 (AT5G27280)Zim17-type zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:832786] identity=75.3; qcov=0.667; evalue=7.06e-71; confidence=high |
| Rice | Os06g0724400 (OsDNLZ1)- identity=56.6; qcov=0.995; evalue=2.92e-72; confidence=high |
| GO | GO:0005739 (mitochondrion); GO:0006457 (protein folding); GO:0008270 (zinc ion binding); GO:0030150 (protein import into mitochondrial matrix); GO:0050821 (protein stabilization); GO:0051087 (protein-folding chaperone binding) |
| KEGG | - |
| Pfam | PF05180 (zf-DNL) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012982 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057796955.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.80000 | XP_057796955.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057796955.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057796955.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057796955.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:64558399 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B101 |
Chr2:64558399 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B101 |
Chr2:64558401 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | B101 |
Chr2:64558401 |
AT |
A |
1bp_deletion | CDS_variant | 1 | B101 |
Chr2:64559938 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr2:64560328 |
TGG |
T |
2bp_deletion | frameshift_variant | 1 | C70 |
Chr2:64560328 |
TGG |
T |
2bp_deletion | CDS_variant | 1 | C70 |
Chr2:64560331 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | C70 |
Chr2:64560331 |
TG |
T |
1bp_deletion | CDS_variant | 1 | C70 |
Chr2:64560334 |
T |
TGG |
2bp_insertion | frameshift_variant | 16 | A13,B18,B26,B49,B52,B73,B78,B8,B91,B93,C38,C46,C50,C60,C63,C72 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057796955.1PF05180
zf-DNL 130-183 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796955.1 |
Pfam | PF05180 |
zf-DNL | Domain | 130 | 183 | 2.5e-17 | 63.3 | DNL zinc finger |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。