Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004261`

染色体: Chr02 坐标: 64821412-64823701 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004261`
名称	SmilChr02G004261
描述	pentatricopeptide repeat-containing protein At1g26900, mitochondrial-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	64821412 - 64823701 / `+`

ID 对照

NCBI Gene ID	`LOC131012995`
GeneID	`131012995`
locus_tag	`-`
NCBI Name	`LOC131012995`
原始查询	`SmilChr02G004261`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At1g26900, mitochondrial-like
产物	pentatricopeptide repeat-containing protein At1g26900%2C mitochondrial-like
Arabidopsis	`AT1G26900` (AT1G26900) Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838376] identity=53.1; qcov=0.946; evalue=0; confidence=high
Rice	`Os08g0494350` - identity=48.1; qcov=0.637; evalue=1.16e-111; confidence=high
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:131012995

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057796977.1`
2	Nucleus	细胞核	0.00000	`XP_057796977.1`
3	Chromosome	染色体	0.00000	`XP_057796977.1`
4	Centromere	着丝粒	0.00000	`XP_057796977.1`
5	Chromatin	染色质	0.00000	`XP_057796977.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:64821999`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:64822267`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr2:64822270`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B83,B84,C45,C63
`Chr2:64822272`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B57
`Chr2:64822293`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A10,A24,B55,B98,C48
`Chr2:64822369`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A10,B98,C48,C5
`Chr2:64822428`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B1,B102,B66,B79,C86
`Chr2:64822524`	`AC`	`A`	1bp_deletion	frameshift_variant	5	A15,B103,B127,B129,B54
`Chr2:64822524`	`AC`	`A`	1bp_deletion	CDS_variant	5	A15,B103,B127,B129,B54
`Chr2:64822576`	`GT`	`G`	1bp_deletion	frameshift_variant	30	A10,A3,A6,B102,B106,B109,B124,B128,B16,B19,B20,B24,B30,B33,B34,B5,B60,B66,B75,B86,B90,B92,B99,C1,C21,C28,C38,C44,C50,C73
`Chr2:64822706`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B1,B124,B135,C25,C79
`Chr2:64822741`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B129

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796977.1

575 aa

288

575

PPR

TPR_24

PPR_3

PPR_1

PPR_2

PPR

PPR_2

PPR_3

PPR

PF01535 PPR 95-124 aa PF01535 PPR 167-190 aa PF01535 PPR 271-292 aa PF23276 TPR_24 284-392 aa PF13812 PPR_3 292-343 aa PF12854 PPR_1 294-322 aa PF13041 PPR_2 296-343 aa PF01535 PPR 299-326 aa PF01535 PPR 372-398 aa PF13041 PPR_2 397-445 aa PF13812 PPR_3 398-444 aa PF01535 PPR 401-430 aa PF01535 PPR 435-462 aa PF01535 PPR 472-494 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796977.1`	Pfam	`PF01535`	PPR	Repeat	95	124	2.7e-50	165.9	PPR repeat
`XP_057796977.1`	Pfam	`PF01535`	PPR	Repeat	167	190	2.7e-50	165.9	PPR repeat
`XP_057796977.1`	Pfam	`PF01535`	PPR	Repeat	271	292	2.7e-50	165.9	PPR repeat
`XP_057796977.1`	Pfam	`PF23276`	TPR_24	Repeat	284	392	2.3e-08	34.7	Pentatricopeptide repeat-containing protein
`XP_057796977.1`	Pfam	`PF13812`	PPR_3	Repeat	292	343	3.6e-18	66.1	Pentatricopeptide repeat domain
`XP_057796977.1`	Pfam	`PF12854`	PPR_1	Repeat	294	322	1.7e-31	108.3	PPR repeat
`XP_057796977.1`	Pfam	`PF13041`	PPR_2	Repeat	296	343	6.4e-49	164.6	PPR repeat family
`XP_057796977.1`	Pfam	`PF01535`	PPR	Repeat	299	326	2.7e-50	165.9	PPR repeat
`XP_057796977.1`	Pfam	`PF01535`	PPR	Repeat	372	398	2.7e-50	165.9	PPR repeat
`XP_057796977.1`	Pfam	`PF13041`	PPR_2	Repeat	397	445	6.4e-49	164.6	PPR repeat family
`XP_057796977.1`	Pfam	`PF13812`	PPR_3	Repeat	398	444	3.6e-18	66.1	Pentatricopeptide repeat domain
`XP_057796977.1`	Pfam	`PF01535`	PPR	Repeat	401	430	2.7e-50	165.9	PPR repeat
`XP_057796977.1`	Pfam	`PF01535`	PPR	Repeat	435	462	2.7e-50	165.9	PPR repeat
`XP_057796977.1`	Pfam	`PF01535`	PPR	Repeat	472	494	2.7e-50	165.9	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057940994.1
TTTTAAATGGATGCTCAATGTTGGGATCGAGTAAGTATTTGCTTTCTTCTTTTAAAATTAGTCGAAGAGTCAAAATTTCAACATTAACTCTAGGCCCCAGCTTCTGATTTAAAATGGTGGAATTTTAAACAATTTGGAGGATAAGGGGATGACCATATCGTTACAGAAGTAGCAGGTGTTGGTAGTTGAGAAGCGAGAGGGATAAAGAATGAGCGAGAAAGAGAGAGAAGACAGATTTGAAAGAAGAATGCCTACTGATC...

CDS

1 records

下载 CDS FASTA

LOC131012995
ATGATCAAAAGAGATATTACGTCACAATGTTGGCGCAGATTCAAGAACTGGCCCATCAATCACTGCTACTCCACACTTTCCTCAGACTTTGAGCACCAAAATCTCATCTCCCTGCTACAATCCTGCGATCAAATCTGCCAAAGTGCTCAAATTCACTGTTTGATGCTCAAGACTGGTCTCGACCGAATCCCATTTCCACTGAGTAAGCTTCTCGCCCAAATCTCTATGCAGGATATCAGTTATGCAGACTCCATCTTCAA...

Protein

1 records

下载 Protein FASTA

XP_057796977.1
MIKRDITSQCWRRFKNWPINHCYSTLSSDFEHQNLISLLQSCDQICQSAQIHCLMLKTGLDRIPFPLSKLLAQISMQDISYADSIFKQIKTPNLYMFNTMLRGHSVGSDPQNGLLLFNRMRAENHGFDQFTFVSVLKSCSRLLEIQTGLGVHTCVLKSGFGSVLNVMNALLHFYCVCGKTEDARHLFDDMGMMKDLVSGNTLMGGYLCVKEYALVLDLFKLLCRDSFGVSVTTILSAVSAVGQLLNASMGETIHVFCFKV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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