Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004265`

染色体: Chr02 坐标: 64847257-64859221 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004265`
名称	SmilChr02G004265
描述	uncharacterized SmilChr02G004265
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	64847257 - 64859221 / `-`

ID 对照

NCBI Gene ID	`LOC131012983`
GeneID	`131012983`
locus_tag	`-`
NCBI Name	`LOC131012983`
原始查询	`SmilChr02G004265`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Ubiquitin-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834227]; symbol=AT5G42220; hit=AT5G42220; species=arabidopsis; confidence=medium
产物	Ubiquitin-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834227]; symbol=AT5G42220; hit=AT5G42220; species=arabidopsis; confidence=medium
Arabidopsis	`AT5G42220` (AT5G42220) Ubiquitin-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834227] identity=41.7; qcov=1.07; evalue=0; confidence=medium
Rice	`Os07g0498800` (CRTintP) - identity=39.5; qcov=0.455; evalue=2.26e-75; confidence=medium
GO	GO:0030433 (GO:0030433); GO:0031593 (polyubiquitin modification-dependent protein binding); GO:0051787 (misfolded protein binding); GO:0071818 (BAT3 complex)
KEGG	-
Pfam	PF00240 (ubiquitin); PF11976 (Rad60-SLD)
InterPro	-
eggNOG	-
NR	GeneID:131012983

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057796956.1`
2	Cytosol	细胞质基质	1.00000	`XP_057796956.1`
3	Nucleus	细胞核	0.80000	`XP_057796956.1`
4	Nucleus membrane	核膜	0.20000	`XP_057796956.1`
5	Autophagic vesicle	Autophagic vesicle	0.20000	`XP_057796956.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:64847692`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr2:64847726`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B61
`Chr2:64849449`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C38
`Chr2:64849451`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A24
`Chr2:64849474`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B41,B63
`Chr2:64849615`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D1
`Chr2:64849663`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A10,B14,B19,B28
`Chr2:64849828`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B54,C32,C38
`Chr2:64849844`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B120,B140,B77,C49,C71
`Chr2:64849872`	`G`	`GT`	1bp_insertion	frameshift_variant	109	A10,A11,A14,A18,A19,A21,A22,A24,A4,A7,A8,A9,B100,B101,B102,B103,B11,B110,B112,B113,B114,B121,B122,B123,B124,B127,B128,B129,B13,B131,B133,B135,B136,B137,B139,B14,B16,B17,B2,B20,B21,B25,B29,B30,B38,B39,B55,B57,B59,B61,B62,B63,B65,B66,B67,B69,B71,B72,B73,B79,B81,B82,B84,B85,B86,B88,B9,B90,B91,B92,B94,B99,C1,C11,C13,C17,C18,C21,C23,C24,C25,C26,C29,C3,C30,C33,C36,C37,C42,C43,C45,C51,C52,C54,C55,C58,C60,C64,C69,C74,C75,C8,C80,C83,C87,C9,D10,D5,D6
`Chr2:64851200`	`AGG`	`A`	2bp_deletion	frameshift_variant	6	B30,B80,C59,C70,C79,D2
`Chr2:64851310`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B119,B72,C26

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796956.1

896 aa

448

896

Rad60-SLD

ubiquitin

PF11976 Rad60-SLD 25-93 aa PF00240 ubiquitin 26-96 aa

XP_057796957.1

896 aa

448

896

Rad60-SLD

ubiquitin

PF11976 Rad60-SLD 25-93 aa PF00240 ubiquitin 26-96 aa

XP_057796958.1

896 aa

448

896

Rad60-SLD

ubiquitin

PF11976 Rad60-SLD 25-93 aa PF00240 ubiquitin 26-96 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796956.1`	Pfam	`PF11976`	Rad60-SLD	Family	25	93	1.6e-07	31.8	Ubiquitin-2 like Rad60 SUMO-like
`XP_057796956.1`	Pfam	`PF00240`	ubiquitin	Domain	26	96	1.6e-21	76.6	Ubiquitin family
`XP_057796957.1`	Pfam	`PF11976`	Rad60-SLD	Family	25	93	1.6e-07	31.8	Ubiquitin-2 like Rad60 SUMO-like
`XP_057796957.1`	Pfam	`PF00240`	ubiquitin	Domain	26	96	1.6e-21	76.6	Ubiquitin family
`XP_057796958.1`	Pfam	`PF11976`	Rad60-SLD	Family	25	93	1.6e-07	31.8	Ubiquitin-2 like Rad60 SUMO-like
`XP_057796958.1`	Pfam	`PF00240`	ubiquitin	Domain	26	96	1.6e-21	76.6	Ubiquitin family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057940973.1
CTTCATAAGTGGACTCTAGAGTCTAGACCCTTCTGGAACAATTACAAATTTGACATTGTGATTACGTTGCGTTATTCTATTTCTCGTCAAAATCATTTCTTTGATTCTTTGATTTCAAGCGTGTTCAAATCAAGCCCTTTTCCTCTCTCACCCTTCTCCGATTTTCTCTCCGACAATCCCAGAGATATATAGTGACCTTGAAGTTACATGGCTGAGTCGAAGCCTTGTGATGGCTCTAGTACAAGTAATGTCTGTGGTGG...

XM_057940974.1
AATTACAAATTTGACATTGTGATTACGTTGCGTTATTCTATTTCTCGTCAAAATCATTTCTTTGATTCTTTGATTTCAAGCGTGTTCAAATCAAGCCCTTTTCCTCTCTCACCCTTCTCCGATTTTCTCTCCGACAATCCCAGAGGTTTGATTTTGCATTTGAATCAGCCTTTTTTGTTTATTATTTCCCTTTCCCTTTTCATTATACGATATGATTTGCCATTTTGAACCCTAAGGTCTACTTGTTTTATTTTGTTGAT...

CDS

3 records

下载 CDS FASTA

LOC131012983
ATGGCTGAGTCGAAGCCTTGTGATGGCTCTAGTACAAGTAATGTCTGTGGTGGAAGTTCTGAATCAACTCTTCAGCTCAATGTCAAGACCCTGGATTCCCGAATTTACAGCTTCCGTGTGGATAAATATATGTCCGTATCAGCATTTAAGGATAAAGTAGCAGTTCAAAGCGGCGTGCCTGTTGGGCAGCAGCGTCTAATTTTTAGGGGCAAGGTGTTAAAGGATGATCACCTTCTTTCAGAATACAACGTGGAAAATGA...

Protein

3 records

下载 Protein FASTA

XP_057796956.1
MAESKPCDGSSTSNVCGGSSESTLQLNVKTLDSRIYSFRVDKYMSVSAFKDKVAVQSGVPVGQQRLIFRGKVLKDDHLLSEYNVENEDTLHLVERQPQPSTGSSSGEATSNNGIRGQDSAGGSRHRIGPIAQSIVMGTLNVGDPGEAVVPDLSRVIGAVLNSIGISNLAGGLQAGPPASHGNASEGSQGDGGIENQGGNQSIPWQAFHGPSASHAMHIPLGAAVAIPSLNMPVPDSLSTLVEYMNRMEQAFLQNDNQPNQ...

XP_057796957.1
MAESKPCDGSSTSNVCGGSSESTLQLNVKTLDSRIYSFRVDKYMSVSAFKDKVAVQSGVPVGQQRLIFRGKVLKDDHLLSEYNVENEDTLHLVERQPQPSTGSSSGEATSNNGIRGQDSAGGSRHRIGPIAQSIVMGTLNVGDPGEAVVPDLSRVIGAVLNSIGISNLAGGLQAGPPASHGNASEGSQGDGGIENQGGNQSIPWQAFHGPSASHAMHIPLGAAVAIPSLNMPVPDSLSTLVEYMNRMEQAFLQNDNQPNQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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