Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004277`

染色体: Chr02 坐标: 64970756-64976471 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004277`
名称	SmilChr02G004277
描述	probable CoA ligase CCL5
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	64970756 - 64976471 / `-`

ID 对照

NCBI Gene ID	`LOC131012990`
GeneID	`131012990`
locus_tag	`-`
NCBI Name	`LOC131012990`
原始查询	`SmilChr02G004277`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable CoA ligase CCL5
产物	probable CoA ligase CCL5
Arabidopsis	`AT1G20510` (OPCL1) OPC-8:0 CoA ligase1 [Source:NCBI gene (formerly Entrezgene);Acc:838639] identity=73.9; qcov=0.986; evalue=0; confidence=high
Rice	`Os03g0132000` (OsACS4) - identity=63.9; qcov=0.995; evalue=0; confidence=high
GO	GO:0005777 (peroxisome); GO:0016405 (CoA-ligase activity)
KEGG	smil00592 (alpha-Linolenic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00501 (AMP-binding); PF13193 (AMP-binding_C)
InterPro	-
eggNOG	-
NR	GeneID:131012990

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Peroxisome	过氧化物酶体	1.00000	`XP_057796972.1`
2	Endoplasmic reticulum	内质网	0.20000	`XP_057796971.1`
3	Cytosol	细胞质基质	0.20000	`XP_057796972.1`
4	Nucleus	细胞核	0.00000	`XP_057796971.1`
5	Chromosome	染色体	0.00000	`XP_057796971.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:64971609`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B113,C16
`Chr2:64971645`	`C`	`CTA`	2bp_insertion	frameshift_variant	6	A13,B23,B49,B52,C39,D11
`Chr2:64972250`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B127
`Chr2:64975242`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C7
`Chr2:64975309`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B52,C10
`Chr2:64975363`	`CCG`	`C`	2bp_deletion	frameshift_variant	161	A1,A11,A13,A15,A18,A20,A25,A4,A6,A7,B1,B10,B100,B102,B104,B105,B106,B108,B109,B11,B111,B113,B117,B121,B122,B124,B125,B127,B129,B13,B133,B134,B136,B137,B138,B14,B140,B16,B19,B2,B20,B21,B22,B23,B24,B25,B26,B29,B3,B30,B31,B32,B33,B35,B36,B37,B4,B40,B41,B42,B43,B45,B49,B5,B50,B53,B55,B56,B58,B59,B60,B61,B62,B63,B65,B66,B68,B71,B72,B75,B76,B77,B78,B79,B80,B81,B82,B83,B84,B85,B86,B88,B89,B9,B90,B91,B92,B93,B95,B96,B97,B98,C11,C12,C13,C18,C19,C2,C20,C24,C25,C26,C27,C29,C30,C31,C32,C34,C35,C36,C4,C41,C43,C45,C46,C47,C48,C5,C50,C51,C52,C53,C55,C56,C58,C59,C60,C61,C62,C63,C64,C65,C67,C68,C69,C70,C71,C72,C77,C78,C79,C8,C86,D1,D10,D11,D2,D3,D4,D7,D8
`Chr2:64975367`	`G`	`GCA`	2bp_insertion	frameshift_variant	164	A1,A11,A13,A15,A18,A20,A25,A4,A6,A7,B1,B10,B100,B102,B104,B105,B106,B108,B109,B11,B111,B113,B117,B121,B122,B124,B125,B127,B129,B13,B133,B134,B135,B136,B137,B138,B14,B140,B16,B19,B2,B20,B21,B22,B23,B24,B25,B26,B29,B3,B30,B31,B32,B33,B35,B36,B37,B4,B40,B41,B42,B43,B45,B49,B5,B50,B53,B55,B56,B58,B59,B60,B61,B62,B63,B65,B66,B68,B71,B72,B75,B76,B77,B78,B79,B80,B81,B82,B83,B84,B85,B86,B88,B89,B9,B90,B91,B92,B93,B95,B96,B97,B98,C11,C12,C13,C18,C19,C2,C20,C24,C25,C26,C27,C29,C30,C31,C32,C34,C35,C36,C4,C40,C41,C42,C43,C45,C46,C47,C48,C5,C50,C51,C52,C53,C55,C56,C58,C59,C60,C61,C62,C63,C64,C65,C67,C68,C69,C70,C71,C72,C77,C78,C79,C8,C86,D1,D10,D11,D2,D3,D4,D7,D8
`Chr2:64975406`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B128,B69
`Chr2:64975407`	`G`	`GA`	1bp_insertion	frameshift_variant	9	A6,B1,B136,B39,B80,C20,C22,C50,D5
`Chr2:64975475`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B123,B7,C18,C4,C52
`Chr2:64975499`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B120,B63,B90,C21
`Chr2:64975527`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B56,B96

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796971.1

569 aa

284

569

AMP-binding

AMP-binding_C

PF00501 AMP-binding 48-412 aa PF13193 AMP-binding_C 463-536 aa

XP_057796972.1

552 aa

276

552

AMP-binding

AMP-binding_C

PF00501 AMP-binding 48-412 aa PF13193 AMP-binding_C 463-538 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796971.1`	Pfam	`PF00501`	AMP-binding	Family	48	412	1.1e-87	295.0	AMP-binding enzyme
`XP_057796971.1`	Pfam	`PF13193`	AMP-binding_C	Domain	463	536	1e-10	43.1	AMP-binding enzyme C-terminal domain
`XP_057796972.1`	Pfam	`PF00501`	AMP-binding	Family	48	412	1.1e-87	295.1	AMP-binding enzyme
`XP_057796972.1`	Pfam	`PF13193`	AMP-binding_C	Domain	463	538	2.4e-18	67.6	AMP-binding enzyme C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XR_009097552.1
ACTATAAAGTATAAACCCACCACTTTTTCAGTTGCTCCAACACTACCTGCGAATCTTCAACTATTTTCTCCAACACTACCTGCGAATCTTCAACTCTTTAATGGCGAAATCTATCTCCACTTATCCAAACACGGATCCGCGCAGCGGATTCTGCAGCGCCAACTCCACCTTCTACAGCAAGCGCAAGCCAATCCCTCTCCCTGCCAACCAATCCCTCGACGTCACCACCTTCATCTCCTCTCGGGCTCACCACGGCGAGG...

XR_009097553.1
ACTATAAAGTATAAACCCACCACTTTTTCAGTTGCTCCAACACTACCTGCGAATCTTCAACTATTTTCTCCAACACTACCTGCGAATCTTCAACTCTTTAATGGCGAAATCTATCTCCACTTATCCAAACACGGATCCGCGCAGCGGATTCTGCAGCGCCAACTCCACCTTCTACAGCAAGCGCAAGCCAATCCCTCTCCCTGCCAACCAATCCCTCGACGTCACCACCTTCATCTCCTCTCGGGCTCACCACGGCGAGG...

CDS

2 records

下载 CDS FASTA

LOC131012990
ATGGCGAAATCTATCTCCACTTATCCAAACACGGATCCGCGCAGCGGATTCTGCAGCGCCAACTCCACCTTCTACAGCAAGCGCAAGCCAATCCCTCTCCCTGCCAACCAATCCCTCGACGTCACCACCTTCATCTCCTCTCGGGCTCACCACGGCGAGGTCGCCTTCATCGACGCCGCTAGCGGTCGCAGCCTCACCTTCGCCGAGCTATGGCGAGCCGTTGACGCCGTCTCCACCTCCCTCTCCTCCGACTTTGGCAT...

Protein

2 records

下载 Protein FASTA

XP_057796971.1
MAKSISTYPNTDPRSGFCSANSTFYSKRKPIPLPANQSLDVTTFISSRAHHGEVAFIDAASGRSLTFAELWRAVDAVSTSLSSDFGIRKGHVILLLTPNSIYFPIVCLAVMSLGAIITTTNPLNTAREIAKQIADSKPSLAFTVPQLLPKLADSNLPIVLLGGGAPSSSKLRIITTIEEMMRREPSASRVRERVNQDDTATLLYSSGTTGASKGVVSSHKNLIAMVQTVVSRFKLEDGKQTFICTVPMFHIYGLVAFATG...

XP_057796972.1
MAKSISTYPNTDPRSGFCSANSTFYSKRKPIPLPANQSLDVTTFISSRAHHGEVAFIDAASGRSLTFAELWRAVDAVSTSLSSDFGIRKGHVILLLTPNSIYFPIVCLAVMSLGAIITTTNPLNTAREIAKQIADSKPSLAFTVPQLLPKLADSNLPIVLLGGGAPSSSKLRIITTIEEMMRREPSASRVRERVNQDDTATLLYSSGTTGASKGVVSSHKNLIAMVQTVVSRFKLEDGKQTFICTVPMFHIYGLVAFATG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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