当前解析结果
SmilChr02G004280| 统一新 Gene ID | SmilChr02G004280 |
|---|---|
| 名称 | SmilChr02G004280 |
| 描述 | uncharacterized SmilChr02G004280 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 64989756 - 64991317 / - |
| NCBI Gene ID | LOC131013000 |
|---|---|
| GeneID | 131013000 |
| locus_tag | - |
| NCBI Name | LOC131013000 |
| 原始查询 | SmilChr02G004280 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | SEC61; symbol=SEC61; hit=Os09g0347700; species=rice; confidence=high |
| 产物 | SEC61; symbol=SEC61; hit=Os09g0347700; species=rice; confidence=high |
| Arabidopsis | AT2G34250 (AT2G34250)SecY protein transport family protein [Source:NCBI gene (formerly Entrezgene);Acc:817986] identity=81.3; qcov=1.03; evalue=0; confidence=high |
| Rice | Os09g0347700 (SEC61)- identity=81.9; qcov=1.03; evalue=0; confidence=high |
| GO | GO:0005048 (signal sequence receptor activity); GO:0005784 (Sec61 translocon complex); GO:0006616 (SRP-dependent cotranslational protein targeting to membrane, translocation); GO:0008320 (transmembrane protein transporter activity); GO:0016020 (membrane); GO:0031204 (post-translational protein targeting to membrane, translocation); GO:0043022 (ribosome binding) |
| KEGG | smil03060 (Protein export - Salvia miltiorrhiza (redroot sage)); smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage)); smil04145 (Phagocytosis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00344 (SecY); PF10559 (Plug_translocon) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013000 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.80000 | XP_057796983.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.80000 | XP_057796983.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.40000 | XP_057796983.1 |
| 4 | Vacuole | 液泡 | 0.20000 | XP_057796983.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057796983.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:64989861 |
CTT |
C |
2bp_deletion | frameshift_variant | 43 | A10,A2,A6,A9,B102,B106,B110,B113,B122,B124,B125,B128,B132,B17,B19,B20,B21,B30,B34,B46,B5,B57,B60,B75,B86,B88,B90,B92,B99,C1,C21,C28,C31,C38,C47,C48,C51,C54,C72,C73,C84,D1,D7 |
Chr2:64990017 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr2:64990207 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B34,B87,C19,C36,C49 |
Chr2:64990336 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B98,C58,C75,C86 |
Chr2:64990339 |
G |
GC |
1bp_insertion | frameshift_variant | 3 | B98,C75,C86 |
Chr2:64990339 |
G |
GC |
1bp_insertion | CDS_variant | 3 | B98,C75,C86 |
Chr2:64990498 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr2:64990812 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B1,B14,B28 |
Chr2:64990826 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B93 |
Chr2:64990854 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B10,B26,B68,C49 |
Chr2:64990936 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B65 |
Chr2:64990936 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796983.1PF10559
Plug_translocon 42-76 aa
PF00344
SecY 77-443 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796983.1 |
Pfam | PF10559 |
Plug_translocon | Domain | 42 | 76 | 1.7e-17 | 63.6 | Plug domain of Sec61p |
XP_057796983.1 |
Pfam | PF00344 |
SecY | Family | 77 | 443 | 1.5e-72 | 245.3 | SecY |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。