Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004301`

染色体: Chr02 坐标: 65382749-65386575 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004301`
名称	SmilChr02G004301
描述	protein NARROW LEAF 1-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	65382749 - 65386575 / `+`

ID 对照

NCBI Gene ID	`LOC131013041`
GeneID	`131013041`
locus_tag	`-`
NCBI Name	`LOC131013041`
原始查询	`SmilChr02G004301`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein NARROW LEAF 1-like
产物	protein NARROW LEAF 1-like
Arabidopsis	`AT5G45030` (AT5G45030) Trypsin family protein [Source:NCBI gene (formerly Entrezgene);Acc:834534] identity=64.7; qcov=1.05; evalue=0; confidence=high
Rice	`Os04g0615000` (NAL1) Protein NARROW LEAF 1 [Source:NCBI gene (formerly Entrezgene);Acc:4336986] identity=61; qcov=1.03; evalue=0; confidence=high
GO	-
KEGG	-
Pfam	PF25608 (NAL1_N); PF25819 (Nal1_C)
InterPro	-
eggNOG	-
NR	GeneID:131013041

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057797017.1`
2	Cytoplasm	细胞质	0.80000	`XP_057797017.1`
3	Nucleus	细胞核	0.40000	`XP_057797017.1`
4	Nucleoplasm	核质	0.20000	`XP_057797017.1`
5	Chromosome	染色体	0.00000	`XP_057797017.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:65384403`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D8
`Chr2:65384437`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B132,B32,B41,B51,C70
`Chr2:65384587`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr2:65384726`	`TGG`	`T`	2bp_deletion	frameshift_variant	1	C17
`Chr2:65384726`	`TGG`	`T`	2bp_deletion	CDS_variant	1	C17
`Chr2:65384747`	`CTA`	`C`	2bp_deletion	frameshift_variant	1	C17
`Chr2:65384747`	`CTA`	`C`	2bp_deletion	CDS_variant	1	C17
`Chr2:65384757`	`C`	`CCG`	2bp_insertion	frameshift_variant	1	C17
`Chr2:65384757`	`C`	`CCG`	2bp_insertion	CDS_variant	1	C17
`Chr2:65384759`	`CTT`	`C`	2bp_deletion	frameshift_variant	1	C17
`Chr2:65384759`	`CTT`	`C`	2bp_deletion	CDS_variant	1	C17
`Chr2:65384841`	`CT`	`C`	1bp_deletion	frameshift_variant	1	C17

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797017.1

570 aa

285

570

NAL1_N

Nal1_C

PF25608 NAL1_N 88-166 aa PF25819 Nal1_C 180-444 aa

XP_057797018.1

570 aa

285

570

NAL1_N

Nal1_C

PF25608 NAL1_N 88-166 aa PF25819 Nal1_C 180-444 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797017.1`	Pfam	`PF25608`	NAL1_N	Domain	88	166	3.3e-42	142.8	NARROW LEAF 1 N-terminal domain
`XP_057797017.1`	Pfam	`PF25819`	Nal1_C	Domain	180	444	1.1e-151	504.2	Nal1 C-terminal domain
`XP_057797018.1`	Pfam	`PF25608`	NAL1_N	Domain	88	166	3.3e-42	142.8	NARROW LEAF 1 N-terminal domain
`XP_057797018.1`	Pfam	`PF25819`	Nal1_C	Domain	180	444	1.1e-151	504.2	Nal1 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057941034.1
AATTGACAAAAATGAGTGAAGATAATCCAACTGACAACATATAATGGCTGCACCCTTCTCTGTCTCCCTTCCTCTCTCTCTCTCTCTCTCTCTCACAGTGGAGATAGTTGAAACTTGAAGAAATAGTGAATATTTGAACTTGGTCAGCTTTATCTACATATCTTTTCTTCTAGATTTAGGTATCAAGAATACACAAATTATCGACATAAACACCAGTTTTTGTTGCAAACAGAAAAAAGATTATTATTTTTGCTTTCTTT...

XM_057941035.1
AGATTGATTGTGACGGCAGCATCGACGGCCAAGAAGCTCATTACTGTGATTTACTGCTAATAATCATTCTCCCTTCTTCAAAGAAATACTATACTGCAAGATTTATCGAGTATTTATGTGCTCGTACAAAGAATTGAATATACACAGCTTTATTATTTTATCACCCTTCTGAAAAATAGTCCATTTTCCCAAATAAAGTTTTCCCGTTTGCCCCCTCCCTCTCTCTCACACACACACGCACACTCACACACAGTAGTCAG...

CDS

2 records

下载 CDS FASTA

LOC131013041
ATGGATTCAAGTGCACACAACTCTGGTTCGTCAGAATTGGAGTTGGATTTAGAGAGGGAGTATGACATCAATCTGAATCTTCCCGGTTCAAGTCCACCGCCATTGCAGAGCTTCGTTGCAGCAGGTTCTGAGAGCAATGCTGCATACTTCTCGTGGCCGGCTTGCAGGATAAGCGATGCAGCAGAGGATAGAGCACATTATTTTGGCAATCTTCAAAAGGGGGTTTTGAGTGAAATCCATGGGCGTCGCCCAACAGGATT...

Protein

2 records

下载 Protein FASTA

XP_057797017.1
MDSSAHNSGSSELELDLEREYDINLNLPGSSPPPLQSFVAAGSESNAAYFSWPACRISDAAEDRAHYFGNLQKGVLSEIHGRRPTGLQATTLLELMTIRAFHSKLLRRFSLGTAIGLRIRRGSLTDIPAILVFVGRKVHRQWLNPAQCLPTALEGPGGVWCEVDVVEFSYYGAPAATPTEQFYTELVDRFGGSDPCIGSGSQVASQENYGTLGAIVRSRTGNRQVGFLTNRHVAVDLDFPSQKMFHPLPPSLGPGVYLGA...

XP_057797018.1
MDSSAHNSGSSELELDLEREYDINLNLPGSSPPPLQSFVAAGSESNAAYFSWPACRISDAAEDRAHYFGNLQKGVLSEIHGRRPTGLQATTLLELMTIRAFHSKLLRRFSLGTAIGLRIRRGSLTDIPAILVFVGRKVHRQWLNPAQCLPTALEGPGGVWCEVDVVEFSYYGAPAATPTEQFYTELVDRFGGSDPCIGSGSQVASQENYGTLGAIVRSRTGNRQVGFLTNRHVAVDLDFPSQKMFHPLPPSLGPGVYLGA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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