当前解析结果
SmilChr02G004308| 统一新 Gene ID | SmilChr02G004308 |
|---|---|
| 名称 | SmilChr02G004308 |
| 描述 | copper-transporting ATPase RAN1-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 65454486 - 65460577 / + |
| NCBI Gene ID | LOC131013050 |
|---|---|
| GeneID | 131013050 |
| locus_tag | - |
| NCBI Name | LOC131013050 |
| 原始查询 | SmilChr02G004308 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | copper-transporting ATPase RAN1-like |
| 产物 | copper-transporting ATPase RAN1-like |
| Arabidopsis | AT5G44790 (RAN1)copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) [Source:NCBI gene (formerly Entrezgene);Acc:834509] identity=73.3; qcov=1.02; evalue=0; confidence=high |
| Rice | Os02g0172600 (OsHMA5)- identity=69.5; qcov=0.994; evalue=0; confidence=high |
| GO | GO:0005507 (copper ion binding); GO:0005524 (ATP binding); GO:0006812 (monoatomic cation transport); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0019829 (ATPase-coupled monoatomic cation transmembrane transporter activity) |
| KEGG | smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00122 (E1-E2_ATPase); PF00403 (HMA); PF00702 (Hydrolase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013050 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.80000 | XP_057797034.1 |
| 2 | Vacuole membrane | 液泡膜 | 0.60000 | XP_057797034.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057797034.1 |
| 4 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057797034.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057797034.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:65455124 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A7,B45,B73,C60 |
Chr2:65455176 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A7,B40,C1,C53 |
Chr2:65457513 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:65457588 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr2:65458098 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A7,B40,C1,C53 |
Chr2:65458146 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
Chr2:65458794 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A10,B69,C12,C74,D7 |
Chr2:65459091 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A10,C12,C74,D7 |
Chr2:65459434 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B71 |
Chr2:65459708 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:65459739 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B40,B60,B79,C71,C76 |
Chr2:65459758 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797034.1PF00403
HMA 47-105 aa
PF00403
HMA 127-187 aa
PF00122
E1-E2_ATPase 427-533 aa
PF00702
Hydrolase 642-876 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797034.1 |
Pfam | PF00403 |
HMA | Domain | 47 | 105 | 2.4e-34 | 118.2 | Heavy-metal-associated domain |
XP_057797034.1 |
Pfam | PF00403 |
HMA | Domain | 127 | 187 | 2.4e-34 | 118.2 | Heavy-metal-associated domain |
XP_057797034.1 |
Pfam | PF00122 |
E1-E2_ATPase | Domain | 427 | 533 | 7e-24 | 84.3 | P-type ATPase actuator domain |
XP_057797034.1 |
Pfam | PF00702 |
Hydrolase | Domain | 642 | 876 | 5.8e-32 | 112.4 | haloacid dehalogenase-like hydrolase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。