Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004327`

染色体: Chr02 坐标: 65555415-65558922 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004327`
名称	SmilChr02G004327
描述	vacuolar cation/proton exchanger 2-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	65555415 - 65558922 / `+`

ID 对照

NCBI Gene ID	`LOC131013072`
GeneID	`131013072`
locus_tag	`-`
NCBI Name	`LOC131013072`
原始查询	`SmilChr02G004327`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	vacuolar cation/proton exchanger 2-like
产物	vacuolar cation/proton exchanger 2-like
Arabidopsis	`AT1G55730` (CAX5) cation exchanger 5 [Source:NCBI gene (formerly Entrezgene);Acc:842022] identity=72; qcov=0.889; evalue=0; confidence=high
Rice	`Os03g0397400` (OsCAX2) - identity=75.5; qcov=0.882; evalue=0; confidence=high
GO	GO:0006874 (intracellular calcium ion homeostasis); GO:0009705 (plant-type vacuole membrane); GO:0015369 (calcium:proton antiporter activity); GO:0070588 (calcium ion transmembrane transport)
KEGG	-
Pfam	PF01699 (Na_Ca_ex)
InterPro	-
eggNOG	-
NR	GeneID:131013072

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	1.00000	`XP_057797055.1`
2	Vacuole membrane	液泡膜	1.00000	`XP_057797055.1`
3	Cell membrane	细胞膜	0.40000	`XP_057797055.1`
4	Nucleus	细胞核	0.00000	`XP_057797055.1`
5	Chromosome	染色体	0.00000	`XP_057797055.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:65556264`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:65556560`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B10,B46
`Chr2:65556688`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B138,C64,C66
`Chr2:65557400`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B109,B118,B34,C26
`Chr2:65557448`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B4,D3
`Chr2:65557462`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B4,D3
`Chr2:65557947`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797055.1

425 aa

212

425

Na_Ca_ex

PF01699 Na_Ca_ex 83-237 aa PF01699 Na_Ca_ex 267-409 aa

XP_057797056.1

425 aa

212

425

Na_Ca_ex

PF01699 Na_Ca_ex 83-237 aa PF01699 Na_Ca_ex 267-409 aa

XP_057797057.1

425 aa

212

425

Na_Ca_ex

PF01699 Na_Ca_ex 83-237 aa PF01699 Na_Ca_ex 267-409 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797055.1`	Pfam	`PF01699`	Na_Ca_ex	Family	83	237	4.2e-48	163.8	Sodium/calcium exchanger protein
`XP_057797055.1`	Pfam	`PF01699`	Na_Ca_ex	Family	267	409	4.2e-48	163.8	Sodium/calcium exchanger protein
`XP_057797056.1`	Pfam	`PF01699`	Na_Ca_ex	Family	83	237	4.2e-48	163.8	Sodium/calcium exchanger protein
`XP_057797056.1`	Pfam	`PF01699`	Na_Ca_ex	Family	267	409	4.2e-48	163.8	Sodium/calcium exchanger protein
`XP_057797057.1`	Pfam	`PF01699`	Na_Ca_ex	Family	83	237	4.2e-48	163.8	Sodium/calcium exchanger protein
`XP_057797057.1`	Pfam	`PF01699`	Na_Ca_ex	Family	267	409	4.2e-48	163.8	Sodium/calcium exchanger protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057941073.1
GGGATTTATAATAATAAATAAATAAGTGATGAGAAAATCTAGTGTAATCTTACTCAAAATATTTCATAATTACCCAATAATTGACATGCAATTGCAATATGGTATTGTCATGTGTGGCCACTGGCGCCATATATGCTCCATATTTTCCACTATCATCAAATATTTCAACCCAGTTTTGAACATACATCAACACAACTAGAAAGCTTACACCACTCTGGCTCTCTCTTTGTCTTCTTTCTCTCCCTTGAAGTGGAGTATTC...

XM_057941074.1
TGCACCTTCAGATTGGTCTACTTAGAGAATATTGATCTGGGCTTGTGTTATTCTGTTGCTTGTGCACTGACAATTAGCACCTAACAGTTTAGTGTTTGATTTGCAGCCGCGTGCTTCACTTTCACGTGCTACATATATTGAGAGATGGGATCCATAGAAGAAAAGTTAGGCTTTGAAGTTGAAGAGCATATCCCACTCAGTTCATCCGAGTCCATGAATAAAGTGCAGGCTTTGAATTGTGAAACACCGCGTTTCTTGCA...

CDS

3 records

下载 CDS FASTA

LOC131013072
ATGGGATCCATAGAAGAAAAGTTAGGCTTTGAAGTTGAAGAGCATATCCCACTCAGTTCATCCGAGTCCATGAATAAAGTGCAGGCTTTGAATTGTGAAACACCGCGTTTCTTGCAATTTTCCGGTTTAAGTGGAGTTAGCATTTTGAGGAGTATATACACTGTTTTGATTCAACCCAAGATCAATGCTCTGCTACCCTTTGGTCCCCTGGCAATATTGCTGCACCATTTTACCAGTAAACAAGGATGGGTCTTCTTTTT...

Protein

3 records

下载 Protein FASTA

XP_057797055.1
MGSIEEKLGFEVEEHIPLSSSESMNKVQALNCETPRFLQFSGLSGVSILRSIYTVLIQPKINALLPFGPLAILLHHFTSKQGWVFFFSLVGITPLAERLGYATEQLAFYTGPTVGGLLNATFGNATEMIISMYALKSGMLRVVKQSLLGSILSNMLLVLGCSFFCGGIVHQKLQKFNKATALVNSGLLLMAVMGLLFPALLHFTHTEIHQGKSEIALSRFSSCVMLVAYGCYIFFQLKSQSNLYTSLGEEAENDEEDDAP...

XP_057797056.1
MGSIEEKLGFEVEEHIPLSSSESMNKVQALNCETPRFLQFSGLSGVSILRSIYTVLIQPKINALLPFGPLAILLHHFTSKQGWVFFFSLVGITPLAERLGYATEQLAFYTGPTVGGLLNATFGNATEMIISMYALKSGMLRVVKQSLLGSILSNMLLVLGCSFFCGGIVHQKLQKFNKATALVNSGLLLMAVMGLLFPALLHFTHTEIHQGKSEIALSRFSSCVMLVAYGCYIFFQLKSQSNLYTSLGEEAENDEEDDAP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器