Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004329`

染色体: Chr02 坐标: 65568036-65572115 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004329`
名称	SmilChr02G004329
描述	uncharacterized protein C630.12
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	65568036 - 65572115 / `+`

ID 对照

NCBI Gene ID	`LOC131013074`
GeneID	`131013074`
locus_tag	`-`
NCBI Name	`LOC131013074`
原始查询	`SmilChr02G004329`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Calcineurin-like metallo-phosphoesterase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841809]; symbol=AT1G53710; hit=AT1G53710; species=arabidopsis; confidence=high
产物	Calcineurin-like metallo-phosphoesterase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841809]; symbol=AT1G53710; hit=AT1G53710; species=arabidopsis; confidence=high
Arabidopsis	`AT1G53710` (AT1G53710) Calcineurin-like metallo-phosphoesterase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841809] identity=53.3; qcov=1.03; evalue=0; confidence=high
Rice	`Os03g0397300` - identity=52.9; qcov=0.923; evalue=1.31e-175; confidence=high
GO	GO:0005783 (endoplasmic reticulum); GO:0006506 (GPI anchor biosynthetic process); GO:0016787 (hydrolase activity)
KEGG	smil00563 (Glycosylphosphatidylinositol (GPI)-anchor biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00149 (Metallophos)
InterPro	-
eggNOG	-
NR	GeneID:131013074

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.60000	`XP_057797060.1`
2	Endoplasmic reticulum membrane	内质网膜	0.60000	`XP_057797060.1`
3	Golgi apparatus	高尔基体	0.60000	`XP_057797060.1`
4	Trans-golgi network	Trans-golgi network	0.20000	`XP_057797060.1`
5	Nucleus	细胞核	0.00000	`XP_057797060.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:65568346`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	D10
`Chr2:65568346`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:65568350`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A14,B123
`Chr2:65569100`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B7
`Chr2:65569172`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr2:65569795`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B121,B65,C80
`Chr2:65569924`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A10,B1,B120,B77,C82
`Chr2:65570431`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A22,B58,B65
`Chr2:65570432`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A22,B58,B65
`Chr2:65570903`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B86
`Chr2:65570926`	`CT`	`C`	1bp_deletion	frameshift_variant	3	C43,C55,C65
`Chr2:65570926`	`CT`	`C`	1bp_deletion	CDS_variant	3	C43,C55,C65

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797060.1

520 aa

260

520

Metallophos

PF00149 Metallophos 56-296 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797060.1`	Pfam	`PF00149`	Metallophos	Domain	56	296	2.7e-12	48.2	Calcineurin-like phosphoesterase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057941077.1
CGTAATTACATTGTTTCCCAAAAAATAGTATTGACTTTTACTCGGTGGAAATTCAGATAGTCTCTTCTTTTAGAATTCCAAATAAAGTGATCATTATTTATTGTGATAAAATATGTGCAAATTCCAAGAAAATAAAGAATTTGGGCTTAGAGGAGACGACAAAGAGGTGAAGTGATTAAGGTAAGCTGCAATTAATCTACACTTTCCCACAACAACATGAGCTGAGGATATAACGAACTCTGAGATTAGGAAGAAATTGA...

CDS

1 records

下载 CDS FASTA

LOC131013074
ATGAAACTAACTGTGTTTCTGAGCTTGTTTTGGGCACTGAATTTACTGTATGGAGAGTGGTTTGCATATTTGTTGCCTTCGCATTGGACATGTTCTTGGCCTCATCTTCAACGCCCTTCAAATTCGTCACCGCTGAATGGAGTTGATTATTCTAGTGATTATGTGAAAATTGCTGTTGTTGCAGACCCTCAGCTCATGGATAAAACCTCCCTTCCTCTTTCTCCGAAATCACTTGCTCTGGAGGTTGTGCAGTTCTATAC...

Protein

1 records

下载 Protein FASTA

XP_057797060.1
MKLTVFLSLFWALNLLYGEWFAYLLPSHWTCSWPHLQRPSNSSPLNGVDYSSDYVKIAVVADPQLMDKTSLPLSPKSLALEVVQFYTDLYMRRAFLSSVLPFNPDVILFLGDYFDGSSSLSDEEWQESLGRFRHIFNLNMIQKASNIKIYYLSGNHDIGYSALYYQKPEIIKRYESEFGARNFKVTLGNVDFIAIDAQTLDGHPQGNFASDTWDFIKNASKDISSTPRVLLTHIPLYRSDWTPCGPHRSSAIINQRVHRD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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