当前解析结果
SmilChr02G004331| 统一新 Gene ID | SmilChr02G004331 |
|---|---|
| 名称 | SmilChr02G004331 |
| 描述 | 26S proteasome regulatory subunit 7 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 65584992 - 65589886 / - |
| NCBI Gene ID | LOC131013076 |
|---|---|
| GeneID | 131013076 |
| locus_tag | - |
| NCBI Name | LOC131013076 |
| 原始查询 | SmilChr02G004331 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 26S proteasome regulatory subunit 7 |
| 产物 | 26S proteasome regulatory subunit 7 |
| Arabidopsis | AT1G53750 (RPT1A)regulatory particle triple-A 1A [Source:NCBI gene (formerly Entrezgene);Acc:841812] identity=96.2; qcov=1; evalue=0; confidence=high |
| Rice | Os02g0784700 (OsRpt1b)- identity=97.2; qcov=1; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0008540 (proteasome regulatory particle, base subcomplex); GO:0016887 (ATP hydrolysis activity); GO:0036402 (proteasome-activating activity); GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process) |
| KEGG | smil03050 (Proteasome - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00004 (AAA); PF17862 (AAA_lid_3); PF21236 (OB_PRS7) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013076 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057797062.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057797062.1 |
| 3 | Cytosol | 细胞质基质 | 1.00000 | XP_057797062.1 |
| 4 | Nucleoplasm | 核质 | 0.20000 | XP_057797062.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057797062.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:65585285 |
AC |
A |
1bp_deletion | frameshift_variant | 2 | B51,C70 |
Chr2:65585285 |
AC |
A |
1bp_deletion | CDS_variant | 2 | B51,C70 |
Chr2:65585690 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C56,C65 |
Chr2:65585730 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C4 |
Chr2:65586021 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A21,C2,C32,C68 |
Chr2:65586281 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B104,B56,B74,C87 |
Chr2:65586358 |
AT |
A |
1bp_deletion | frameshift_variant | 3 | A10,B120,B77 |
Chr2:65586358 |
AT |
A |
1bp_deletion | CDS_variant | 3 | A10,B120,B77 |
Chr2:65587584 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B10,B46 |
Chr2:65588879 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B24,C7,C75,D1,D11 |
Chr2:65588951 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C2,C32,C68 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797062.1PF21236
OB_PRS7 79-147 aa
PF00004
AAA 205-338 aa
PF17862
AAA_lid_3 360-403 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797062.1 |
Pfam | PF21236 |
OB_PRS7 | Domain | 79 | 147 | 8.4e-40 | 134.9 | 26S proteasome regulatory subunit 7, OB domain |
XP_057797062.1 |
Pfam | PF00004 |
AAA | Domain | 205 | 338 | 1.1e-40 | 139.8 | ATPase family associated with various cellular activities (AAA) |
XP_057797062.1 |
Pfam | PF17862 |
AAA_lid_3 | Domain | 360 | 403 | 3.4e-11 | 43.2 | AAA+ lid domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。