Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004335`

染色体: Chr02 坐标: 65609273-65613562 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004335`
名称	SmilChr02G004335
描述	alanine aminotransferase 2, mitochondrial-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	65609273 - 65613562 / `+`

ID 对照

NCBI Gene ID	`LOC131013080`
GeneID	`131013080`
locus_tag	`-`
NCBI Name	`LOC131013080`
原始查询	`SmilChr02G004335`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alanine aminotransferase 2, mitochondrial-like
产物	alanine aminotransferase 2%2C mitochondrial-like
Arabidopsis	`AT1G72330` (ALAAT2) alanine aminotransferase 2 [Source:NCBI gene (formerly Entrezgene);Acc:843565] identity=82.6; qcov=0.998; evalue=0; confidence=high
Rice	`Os10g0390500` (ALAAT) - identity=77.2; qcov=1; evalue=0; confidence=high
GO	GO:0004021 (L-alanine:2-oxoglutarate transaminase activity); GO:0009058 (biosynthetic process); GO:0030170 (pyridoxal phosphate binding)
KEGG	smil00220 (Arginine biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00250 (Alanine, aspartate and glutamate metabolism - Salvia miltiorrhiza (redroot sage)); smil00710 (Carbon fixation by Calvin cycle - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01210 (2-Oxocarboxylic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF00155 (Aminotran_1_2)
InterPro	-
eggNOG	-
NR	GeneID:131013080

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057797065.1`
2	Cytoplasm	细胞质	0.80000	`XP_057797065.1`
3	Nucleus	细胞核	0.00000	`XP_057797065.1`
4	Chromosome	染色体	0.00000	`XP_057797065.1`
5	Centromere	着丝粒	0.00000	`XP_057797065.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:65610201`	`CT`	`C`	1bp_deletion	frameshift_variant	1	A6
`Chr2:65610201`	`CT`	`C`	1bp_deletion	CDS_variant	1	A6
`Chr2:65610204`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A6
`Chr2:65611600`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A20,B2
`Chr2:65611774`	`TCA`	`T`	2bp_deletion	frameshift_variant	1	B33
`Chr2:65611774`	`TCA`	`T`	2bp_deletion	CDS_variant	1	B33
`Chr2:65611880`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B139,B61,B83,B97,C59
`Chr2:65612049`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B47,C2,C32,C68
`Chr2:65612134`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr2:65612290`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr2:65612632`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr2:65612689`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B140,B78

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797065.1

483 aa

242

483

Aminotran_1_2

PF00155 Aminotran_1_2 107-458 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797065.1`	Pfam	`PF00155`	Aminotran_1_2	Domain	107	458	5.6e-40	138.4	Aminotransferase class I and II

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057941082.1
TTTCAAGAAATGGCTTCCATTCCGAATTTATTCTAGAATACTATGTCAGTTGTTTGGACAACAAGTTAGACGAATACATCTCGATTTTTGTGCCGCTGCCCCTTTTACCTTTTTTTTTTTTTTTTTCTTGGTATTTTGAAGGATCCTTCTACTTTTTCTTAAACCCACAAATTTGACCAGAAAAATTTCACCCTCACATCGTCACATTTCACAACCGATTCTCTATAAAACAGGCAATTTTATTCATTCCTTTTCCCACT...

CDS

1 records

下载 CDS FASTA

LOC131013080
ATGGCTTCCACTCCTGTTACTGTTGACACAATCAATCCCAAGGTCTTGGAGTGTGAGTATGCAGTTCGTGGAGAAATCGTGATTCTTGCACAGAAATTGCAAGAAGATCTCAAGAACAACCCCAAATCTCATCCTTTCGATGAGATACTCTACTGCAATATTGGAAATCCTCAATCCCTTGGCCAGAAGCCAATCACTTTTTTCCGTGAGGTCCTTGCTTTATGTGACCATCCTGCTCTCTTGGATAAATCTGAAACACA...

Protein

1 records

下载 Protein FASTA

XP_057797065.1
MASTPVTVDTINPKVLECEYAVRGEIVILAQKLQEDLKNNPKSHPFDEILYCNIGNPQSLGQKPITFFREVLALCDHPALLDKSETQSLFSADSIKRASQILSQIPGKATGAYSHSQGVKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLVRSEKDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLETAKSKGICVRALVVINPGNPTGQVLAENNQQQIVDFCKKEGLVLLADE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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