Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004340`

染色体: Chr02 坐标: 65644857-65647214 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004340`
名称	SmilChr02G004340
描述	uncharacterized SmilChr02G004340
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	65644857 - 65647214 / `+`

ID 对照

NCBI Gene ID	`LOC131013084`
GeneID	`131013084`
locus_tag	`-`
NCBI Name	`LOC131013084`
原始查询	`SmilChr02G004340`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Eukaryotic translation initiation factor 2B (eIF-2B) family protein [Source:NCBI gene (formerly Entrezgene);Acc:841828]; symbol=AT1G53900; hit=AT1G53900; species=arabidopsis; confidence=high
产物	Eukaryotic translation initiation factor 2B (eIF-2B) family protein [Source:NCBI gene (formerly Entrezgene);Acc:841828]; symbol=AT1G53900; hit=AT1G53900; species=arabidopsis; confidence=high
Arabidopsis	`AT1G53900` (AT1G53900) Eukaryotic translation initiation factor 2B (eIF-2B) family protein [Source:NCBI gene (formerly Entrezgene);Acc:841828] identity=80.5; qcov=1; evalue=0; confidence=high
Rice	`Os12g0497400` - identity=74.7; qcov=1.04; evalue=0; confidence=high
GO	GO:0003743 (translation initiation factor activity); GO:0005085 (guanyl-nucleotide exchange factor activity); GO:0005851 (eukaryotic translation initiation factor 2B complex); GO:0006413 (translational initiation)
KEGG	-
Pfam	PF01008 (IF-2B)
InterPro	-
eggNOG	-
NR	GeneID:131013084

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057797072.1`
2	Nucleus	细胞核	0.40000	`XP_057797072.1`
3	Chromosome	染色体	0.00000	`XP_057797072.1`
4	Centromere	着丝粒	0.00000	`XP_057797072.1`
5	Chromatin	染色质	0.00000	`XP_057797072.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:65645037`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B64,C14,D3
`Chr2:65645046`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:65645058`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr2:65645079`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr2:65645094`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B64,C14,D3
`Chr2:65645115`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B13,B131,B45,B53
`Chr2:65645132`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A23,B124,B139,B42,B90
`Chr2:65645187`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B72,C25,C77
`Chr2:65645205`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A3
`Chr2:65645212`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C25
`Chr2:65645215`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C25
`Chr2:65645245`	`C`	`T`	EMS_canonical_SNV	stop_gained	27	A16,B107,B111,B115,B130,B131,B15,B27,B30,B41,B45,B55,B63,B66,B7,B73,B75,B78,B88,C16,C2,C25,C33,C37,C79,D10,D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797072.1

357 aa

178

357

IF-2B

PF01008 IF-2B 74-345 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797072.1`	Pfam	`PF01008`	IF-2B	Family	74	345	3.6e-71	240.4	Initiation factor 2 subunit family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057941089.1
CCTAGTACTAATATTTTTTTACAATTTAACCTAAAAATAAGTAATAGACGTGGCAGAGATTTAGCCTCCTTTTATCCTCGACCAAAACCAGCTGCACTGAAACGACGCCGTACCGAGCTCCTCCGCCATGGCAACCGAGAATCCTGACCATAACATCTCCCTTTACTACCAGACACGCGCCGCCCATCACGGCGTCGTGACGAGCGACTGGCTGGATCAGGCGAAAGCTGCCGCCGGCGGCCACCCCGACGACGCCGTCG...

CDS

1 records

下载 CDS FASTA

LOC131013084
ATGGCAACCGAGAATCCTGACCATAACATCTCCCTTTACTACCAGACACGCGCCGCCCATCACGGCGTCGTGACGAGCGACTGGCTGGATCAGGCGAAAGCTGCCGCCGGCGGCCACCCCGACGACGCCGTCGCGAAGAATTCGACTGCTGCCGAGGATGTCGGCGAGGTGTTCAGCGTGGTGGATGAGTTCAATAATTGGCGGAAACTTCCGGAGTTGGCGGAGGCTGTTGCCGCAATTAGGTCGTTGGCTTCGGTTAT...

Protein

1 records

下载 Protein FASTA

XP_057797072.1
MATENPDHNISLYYQTRAAHHGVVTSDWLDQAKAAAGGHPDDAVAKNSTAAEDVGEVFSVVDEFNNWRKLPELAEAVAAIRSLASVIRSSEATTMMELEIELKKAADSLKAWDTTSISLTAGCDLFMRYVTRTSALEYDNFDSAKSRLLERAEKFGEISSNARKRIAMLGQDFIFDGCTILVHGFSRVVLEVLTAAAQNKKLFRVFCTEGRPDRTGLRLSNELAKLDVPVKLLIDSAVAYSMDEVDMVLVGADGVVESGG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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