当前解析结果
SmilChr02G004348| 统一新 Gene ID | SmilChr02G004348 |
|---|---|
| 名称 | SmilChr02G004348 |
| 描述 | uncharacterized SmilChr02G004348 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 65748711 - 65757383 / + |
| NCBI Gene ID | LOC131013096 |
|---|---|
| GeneID | 131013096 |
| locus_tag | - |
| NCBI Name | LOC131013096 |
| 原始查询 | SmilChr02G004348 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | GPI-anchored adhesin-like protein [Source:NCBI gene (formerly Entrezgene);Acc:5007999]; symbol=AT3G14172; hit=AT3G14172; species=arabidopsis; confidence=medium |
| 产物 | GPI-anchored adhesin-like protein [Source:NCBI gene (formerly Entrezgene);Acc:5007999]; symbol=AT3G14172; hit=AT3G14172; species=arabidopsis; confidence=medium |
| Arabidopsis | AT3G14172 (AT3G14172)GPI-anchored adhesin-like protein [Source:NCBI gene (formerly Entrezgene);Acc:5007999] identity=42.2; qcov=0.514; evalue=6.07e-130; confidence=medium |
| Rice | Os07g0616000 (EP2)- identity=44.1; qcov=0.334; evalue=3.12e-79; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF30468 (CIP7_M); PF30469 (CIP7_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013096 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057797084.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057797084.1 |
| 3 | Nucleus membrane | 核膜 | 0.40000 | XP_057797084.1 |
| 4 | Cell membrane | 细胞膜 | 0.40000 | XP_057797084.1 |
| 5 | Cytosol | 细胞质基质 | 0.20000 | XP_057797084.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:65750105 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B12,B86 |
Chr2:65751448 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr2:65751449 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr2:65751848 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B12,B86,D11 |
Chr2:65751885 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A1,C1 |
Chr2:65752520 |
G |
GA |
1bp_insertion | frameshift_variant | 3 | B131,B95,C14 |
Chr2:65752520 |
G |
GA |
1bp_insertion | CDS_variant | 3 | B131,B95,C14 |
Chr2:65752522 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:65752546 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B16 |
Chr2:65752574 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B112,C54 |
Chr2:65752619 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B12,B86 |
Chr2:65752784 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057797084.1PF30469
CIP7_N 12-67 aa
PF30468
CIP7_M 130-205 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797084.1 |
Pfam | PF30469 |
CIP7_N | Domain | 12 | 67 | 4.4e-26 | 91.6 | CIP7 N-terminal domain |
XP_057797084.1 |
Pfam | PF30468 |
CIP7_M | Domain | 130 | 205 | 8.2e-17 | 62.3 | CIP7 middle helical domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。