Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G004358

染色体: Chr02 坐标: 65868832-65872699 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G004358
名称SmilChr02G004358
描述uncharacterized SmilChr02G004358
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向65868832 - 65872699 / -

ID 对照

NCBI Gene IDLOC131013104
GeneID131013104
locus_tag-
NCBI NameLOC131013104
原始查询SmilChr02G004358

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述Lung seven transmembrane receptor family protein [Source:NCBI gene (formerly Entrezgene);Acc:843580]; symbol=AT1G72480; hit=AT1G72480; species=arabidopsis; confidence=high
产物Lung seven transmembrane receptor family protein [Source:NCBI gene (formerly Entrezgene);Acc:843580]; symbol=AT1G72480; hit=AT1G72480; species=arabidopsis; confidence=high
ArabidopsisAT1G72480 (AT1G72480)
Lung seven transmembrane receptor family protein [Source:NCBI gene (formerly Entrezgene);Acc:843580]
identity=73; qcov=0.959; evalue=0; confidence=high
RiceOs09g0439700
-
identity=67; qcov=0.92; evalue=0; confidence=high
GOGO:0005794 (Golgi apparatus); GO:0006810 (transport); GO:0016020 (membrane)
KEGG-
PfamPF06814 (GOST_TM)
InterPro-
eggNOG-
NRGeneID:131013104

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Golgi apparatus 高尔基体 1.00000 XP_057797099.1
2 Trans-golgi network Trans-golgi network 0.80000 XP_057797099.1
3 Cytoplasmic vesicle 细胞质囊泡 0.40000 XP_057797099.1
4 Secretory vesicle Secretory vesicle 0.20000 XP_057797099.1
5 Endosome 内体 0.20000 XP_057797099.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:65869137 G A EMS_canonical_SNV CDS_variant 1 C27
Chr2:65869761 G A EMS_canonical_SNV CDS_variant 1 B114
Chr2:65869980 C T EMS_canonical_SNV CDS_variant 3 B109,B11,C13
Chr2:65870592 C T EMS_canonical_SNV CDS_variant 3 B112,B114,C54
Chr2:65870779 TG T 1bp_deletion frameshift_variant 6 B90,B92,B94,B98,C21,C73
Chr2:65870783 T TC 1bp_insertion frameshift_variant 6 B90,B92,B94,B98,C21,C73
Chr2:65870969 G A EMS_canonical_SNV CDS_variant 1 B10
Chr2:65872373 G A EMS_canonical_SNV CDS_variant 1 B138
Chr2:65872386 C T EMS_canonical_SNV CDS_variant 1 C37

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057797099.1
513 aa
N
1
256
513
GOST_TM
C
PF06814 GOST_TM 210-455 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057797099.1 Pfam PF06814 GOST_TM Domain 210 455 1.7e-93 313.5 GOST, seven transmembrane domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057941116.1
CGAAATAAGTACTGTATTATTTATTGCTATCTATAAGCACTACGTGTAAAACCATTAATGGCCTAGAAGTTAGGCCATAAGTGAGCTCGCCGCACCAGATAACTCCCATTTAATACTACTAGATGAGTCAATGGGTTTAACCAGAGTTAGAGCAGCTTGACTACTCTCTCTCTATACTCTCACCTTCACCATTTTCAGCGCCAGATCTCTCTCTCTCTCTCTCTCTCTTGCTCTCTGCAGATCCACACGCCCGAGCTCAA...

CDS

1 records

下载 CDS FASTA
LOC131013104
ATGCTGCGCTTGAGCTCCGCAACCCCCATTCTGCCCGTCGCGGCGGCGGCGGCGCTGCTTCTGCTCTGCGCTCTTCGCATTGAGGCGTCGGTGCACGAGTACACCGGGGAGAGATTCGCCGCCAAAGGAAATGCGTTCGTTGTTCACGGCGGCAGCGAGGGAATTTACGCTTCCGCCCCTGGACTCAACGAGTCCTCCCCCGGAGACTCTTTTATTCGATTTGAAAAGATAACATTTCAGAGGCCTCTGGACCTGTCCAA...

Protein

1 records

下载 Protein FASTA
XP_057797099.1
MLRLSSATPILPVAAAAALLLLCALRIEASVHEYTGERFAAKGNAFVVHGGSEGIYASAPGLNESSPGDSFIRFEKITFQRPLDLSNFSSESIHAVVFEVDDRDTIGGSAYGGQRAVCCSADLAKLGVCKQGQIIYRPSTSNPGWPQVFGVSFEIDATDATLLPRSLQITKTGMYNLYFIHCDPRLKEVYVEGKSVWKNPTGYLPGRMAPLMKFYGFMSLAFVLLGVFWFSQYARFWREVLPLQNCITLVITLGMFEMAL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器