当前解析结果
SmilChr02G004365| 统一新 Gene ID | SmilChr02G004365 |
|---|---|
| 名称 | SmilChr02G004365 |
| 描述 | ribosomal RNA small subunit methyltransferase, mitochondrial-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 65945908 - 65947705 / + |
| NCBI Gene ID | LOC131013111 |
|---|---|
| GeneID | 131013111 |
| locus_tag | - |
| NCBI Name | LOC131013111 |
| 原始查询 | SmilChr02G004365 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ribosomal RNA small subunit methyltransferase, mitochondrial-like |
| 产物 | ribosomal RNA small subunit methyltransferase%2C mitochondrial-like |
| Arabidopsis | AT5G66360 (DIM1B)Ribosomal RNA adenine dimethylase family protein [Source:NCBI gene (formerly Entrezgene);Acc:836768] identity=62.7; qcov=0.871; evalue=9.85e-137; confidence=high |
| Rice | Os07g0509600- identity=52.3; qcov=0.906; evalue=4.48e-107; confidence=high |
| GO | GO:0000179 (rRNA (adenine-N6,N6-)-dimethyltransferase activity); GO:0005759 (mitochondrial matrix); GO:0031167 (rRNA methylation) |
| KEGG | - |
| Pfam | PF00398 (RrnaAD); PF05175 (MTS); PF06325 (PrmA); PF08241 (Methyltransf_11); PF08242 (Methyltransf_12); PF13649 (Methyltransf_25); PF13847 (Methyltransf_31) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013111 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057797108.1 |
| 2 | Mitochondrion matrix | 线粒体基质 | 0.60000 | XP_057797108.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057797108.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057797108.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057797108.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:65946104 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A20 |
Chr2:65946106 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B32,C47 |
Chr2:65946245 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B134 |
Chr2:65946268 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A14,B134,B80,B94,C48 |
Chr2:65946279 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B134 |
Chr2:65946295 |
A |
AGC |
2bp_insertion | frameshift_variant | 136 | A1,A10,A11,A13,A14,A15,A18,A19,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,B100,B102,B103,B104,B106,B108,B109,B111,B112,B114,B115,B117,B118,B121,B122,B124,B125,B126,B127,B128,B130,B131,B135,B137,B15,B17,B18,B19,B2,B20,B21,B23,B28,B32,B34,B38,B39,B4,B45,B47,B48,B49,B52,B53,B54,B55,B57,B58,B60,B62,B63,B66,B68,B71,B74,B75,B79,B80,B83,B84,B85,B87,B89,B9,B91,B93,B97,B98,C11,C12,C15,C16,C18,C19,C21,C23,C24,C25,C26,C27,C29,C3,C31,C33,C35,C36,C37,C4,C40,C41,C42,C44,C45,C46,C47,C49,C5,C52,C53,C58,C61,C62,C67,C69,C7,C71,C76,C80,C82,C83,C84,C85,D10,D11,D2,D5 |
Chr2:65946296 |
TTA |
T |
2bp_deletion | frameshift_variant | 136 | A1,A10,A11,A13,A14,A15,A18,A19,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,B100,B102,B103,B104,B106,B108,B109,B111,B112,B114,B115,B117,B118,B121,B122,B124,B125,B126,B127,B128,B130,B131,B135,B137,B15,B17,B18,B19,B2,B20,B21,B23,B28,B32,B34,B38,B39,B4,B45,B47,B48,B49,B52,B53,B54,B55,B57,B58,B60,B62,B63,B66,B68,B71,B74,B75,B79,B80,B83,B84,B85,B87,B89,B9,B91,B93,B97,B98,C11,C12,C15,C16,C18,C19,C21,C23,C24,C25,C26,C27,C29,C3,C31,C33,C35,C36,C37,C4,C40,C41,C42,C44,C45,C46,C47,C49,C5,C52,C53,C58,C61,C62,C67,C69,C7,C71,C76,C80,C82,C83,C84,C85,D10,D11,D2,D5 |
Chr2:65946391 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B115,B125,B21,B52,C45 |
Chr2:65946755 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C26 |
Chr2:65946836 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A10,B80,C17,C87 |
Chr2:65946850 |
A |
AGT |
2bp_insertion | frameshift_variant | 107 | A10,A11,A15,A16,A2,A25,A4,A5,B101,B104,B109,B115,B117,B120,B123,B126,B128,B130,B133,B136,B137,B16,B17,B19,B20,B21,B26,B27,B28,B3,B33,B34,B35,B36,B37,B4,B44,B47,B48,B49,B5,B51,B53,B57,B59,B6,B61,B62,B67,B68,B70,B73,B78,B80,B81,B87,B90,B92,B96,B97,B98,C10,C14,C17,C19,C23,C25,C26,C28,C3,C30,C32,C33,C34,C35,C41,C44,C49,C50,C54,C55,C57,C59,C6,C60,C61,C62,C63,C65,C66,C67,C70,C72,C73,C74,C75,C76,C81,C83,C84,C85,C87,D11,D3,D4,D5,D7 |
Chr2:65947035 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B128 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797108.1PF00398
RrnaAD 38-253 aa
PF13847
Methyltransf_31 60-134 aa
PF06325
PrmA 60-139 aa
PF05175
MTS 62-140 aa
PF13649
Methyltransf_25 66-134 aa
PF08241
Methyltransf_11 67-133 aa
PF08242
Methyltransf_12 67-134 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797108.1 |
Pfam | PF00398 |
RrnaAD | Domain | 38 | 253 | 2.5e-61 | 207.9 | Ribosomal RNA adenine dimethylase |
XP_057797108.1 |
Pfam | PF13847 |
Methyltransf_31 | Domain | 60 | 134 | 1.5e-06 | 28.8 | Methyltransferase domain |
XP_057797108.1 |
Pfam | PF06325 |
PrmA | Family | 60 | 139 | 1.4e-06 | 28.8 | Ribosomal protein L11 methyltransferase (PrmA) |
XP_057797108.1 |
Pfam | PF05175 |
MTS | Domain | 62 | 140 | 3.1e-06 | 27.6 | Methyltransferase small domain |
XP_057797108.1 |
Pfam | PF13649 |
Methyltransf_25 | Domain | 66 | 134 | 8.5e-11 | 43.1 | Methyltransferase domain |
XP_057797108.1 |
Pfam | PF08241 |
Methyltransf_11 | Domain | 67 | 133 | 3.4e-07 | 31.5 | Methyltransferase domain |
XP_057797108.1 |
Pfam | PF08242 |
Methyltransf_12 | Domain | 67 | 134 | 1.5e-07 | 32.7 | Methyltransferase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。