Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004376`

染色体: Chr02 坐标: 66117266-66119815 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004376`
名称	SmilChr02G004376
描述	uncharacterized SmilChr02G004376
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	66117266 - 66119815 / `-`

ID 对照

NCBI Gene ID	`LOC131013121`
GeneID	`131013121`
locus_tag	`-`
NCBI Name	`LOC131013121`
原始查询	`SmilChr02G004376`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os03g0410700; species=rice; confidence=high
产物	hit=Os03g0410700; species=rice; confidence=high
Arabidopsis	`AT1G72640` (AT1G72640) NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843596] identity=61.4; qcov=0.91; evalue=8.08e-110; confidence=high
Rice	`Os03g0410700` - identity=61.5; qcov=0.876; evalue=5.98e-114; confidence=high
GO	GO:0009507 (chloroplast)
KEGG	-
Pfam	PF13460 (NAD_binding_10)
InterPro	-
eggNOG	-
NR	GeneID:131013121

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057797116.1`
2	Chloroplast thylakoid	类囊体	1.00000	`XP_057797116.1`
3	Chloroplast stroma	叶绿体基质	0.80000	`XP_057797119.1`
4	Chloroplast thylakoid membrane	类囊体膜	0.20000	`XP_057797116.1`
5	Chloroplast membrane	叶绿体膜	0.20000	`XP_057797119.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:66117605`	`TGA`	`T`	2bp_deletion	frameshift_variant	2	B130,B137
`Chr2:66117605`	`TGA`	`T`	2bp_deletion	CDS_variant	2	B130,B137
`Chr2:66117643`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A10,B55,C23,D6
`Chr2:66117944`	`ACC`	`A`	2bp_deletion	frameshift_variant	59	A14,A21,A24,A7,A8,B108,B11,B112,B113,B118,B12,B121,B122,B133,B136,B138,B140,B17,B19,B21,B22,B25,B33,B38,B4,B48,B49,B51,B59,B64,B69,B7,B70,B71,B79,B84,B95,B98,B99,C13,C14,C15,C17,C19,C22,C26,C3,C33,C37,C4,C44,C54,C62,C66,C8,C86,D4,D7,D9
`Chr2:66117947`	`A`	`ATT`	2bp_insertion	frameshift_variant	59	A14,A21,A24,A7,A8,B108,B11,B112,B113,B118,B12,B121,B122,B124,B130,B133,B136,B138,B140,B17,B19,B21,B22,B25,B33,B38,B4,B48,B49,B51,B59,B64,B69,B7,B70,B71,B79,B84,B95,B98,B99,C13,C14,C15,C19,C22,C26,C3,C33,C37,C4,C44,C54,C66,C8,C86,D4,D7,D9
`Chr2:66117975`	`T`	`TC`	1bp_insertion	frameshift_variant	67	A14,A21,A24,A7,A8,B101,B108,B11,B113,B12,B121,B122,B130,B133,B136,B138,B14,B15,B17,B2,B22,B25,B31,B38,B39,B4,B46,B47,B50,B51,B58,B59,B64,B68,B69,B70,B71,B87,B9,B95,B98,C13,C14,C15,C19,C2,C22,C26,C27,C3,C33,C37,C4,C44,C54,C57,C66,C74,C79,C8,C86,C87,C9,D4,D5,D7,D9
`Chr2:66118009`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B108,B50,C23
`Chr2:66118440`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C37,C82
`Chr2:66119626`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr2:66119639`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A10,B55,C23,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797116.1

307 aa

154

307

NAD_binding_10

PF13460 NAD_binding_10 107-269 aa

XP_057797118.1

305 aa

152

305

NAD_binding_10

PF13460 NAD_binding_10 105-267 aa

XP_057797119.1

301 aa

150

301

NAD_binding_10

PF13460 NAD_binding_10 107-269 aa

XP_057797120.1

299 aa

150

299

NAD_binding_10

PF13460 NAD_binding_10 105-267 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797116.1`	Pfam	`PF13460`	NAD_binding_10	Domain	107	269	6e-14	53.0	NAD(P)H-binding
`XP_057797118.1`	Pfam	`PF13460`	NAD_binding_10	Domain	105	267	5.9e-14	53.1	NAD(P)H-binding
`XP_057797119.1`	Pfam	`PF13460`	NAD_binding_10	Domain	107	269	5.5e-14	53.2	NAD(P)H-binding
`XP_057797120.1`	Pfam	`PF13460`	NAD_binding_10	Domain	105	267	5.4e-14	53.2	NAD(P)H-binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057941133.1
TCCAAAGTCCAAAATTCGAACGATTGGATGACATACGAAACGCAGATAAGAGAAAATTGGTGGGAAAACGAAAGTACGGAACAATCAAAGATAGCTGAATTCCATCAATGGCGGGTTCAGCTTCAGCCCTCTCTCTCTCCAACTCTCTCTCATCCCTCTACTCCAACCGCGCTTTCGAGAATGCCAAACCGTCTTCCTCTTTCGAAAAGCGGCTCTCATTTACCTGCTTCTCGTCCAAGAAGAAAAAACTCGGCTTCATG...

XM_057941137.1
CCAAAGTCCAAAATTCGAACGATTGGATGACATACGAAACGCAGATAAGAGAAAATTGGTGGGAAAACGAAAGTACGGAACAATCAAAGATAGCTGAATTCCATCAATGGCGGGTTCAGCTTCAGCCCTCTCTCTCTCCAACTCTCTCTCATCCCTCTACTCCAACCGCGCTTTCGAGAATGCCAAACCGTCTTCCTCTTTCGAAAAGCGGCTCTCATTTACCTGCTTCTCGTCCAAGAAGAAAAAACTCGGCTTCATGG...

CDS

4 records

下载 CDS FASTA

LOC131013121
ATGGCGGGTTCAGCTTCAGCCCTCTCTCTCTCCAACTCTCTCTCATCCCTCTACTCCAACCGCGCTTTCGAGAATGCCAAACCGTCTTCCTCTTTCGAAAAGCGGCTCTCATTTACCTGCTTCTCGTCCAAGAAGAAAAAACTCGGCTTCATGGACCAGATTCTCGATTACATTGAAGGTGGTCCAAAGTTGAGGAAATGGTATGGAGCTCCTGATATTCTTGAGAAAGATGAAGATGAACTGAACGAAGATGAGGCTCC...

Protein

4 records

下载 Protein FASTA

XP_057797116.1
MAGSASALSLSNSLSSLYSNRAFENAKPSSSFEKRLSFTCFSSKKKKLGFMDQILDYIEGGPKLRKWYGAPDILEKDEDELNEDEAPETEEGEVRDAVLVTDGDNEIGQMIILQLIVKRLRVKALVKDKRVAMEAFGAYVESLAGDPKEKTFLKKAFKGVRAVICPVEGSLYNVDGWKGLQHVILLSQLSVYRDSSGIQAVMNSNARKLAEQDEDVVKASGVPYTIIRTGILKNTPGGQQGFCFHEGCAAKGSLSKEDAA...

XP_057797118.1
MAGSASALSLSNSLSSLYSNRAFENAKPSSSFEKRLSFTCFSSKKKKLGFMDQILDYIEGGPKLRKWYGAPDILEKDEDELNEDEAPEEGEVRDAVLVTDGDNEIGQMIILQLIVKRLRVKALVKDKRVAMEAFGAYVESLAGDPKEKTFLKKAFKGVRAVICPVEGSLYNVDGWKGLQHVILLSQLSVYRDSSGIQAVMNSNARKLAEQDEDVVKASGVPYTIIRTGILKNTPGGQQGFCFHEGCAAKGSLSKEDAAFI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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