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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G004377

染色体: Chr02 坐标: 66124686-66129650 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G004377
名称SmilChr02G004377
描述uncharacterized SmilChr02G004377
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向66124686 - 66129650 / +

ID 对照

NCBI Gene IDLOC131013123
GeneID131013123
locus_tag-
NCBI NameLOC131013123
原始查询SmilChr02G004377

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述TRF-like 6 [Source:NCBI gene (formerly Entrezgene);Acc:843597]; symbol=TRFL6; hit=AT1G72650; species=arabidopsis; confidence=medium
产物TRF-like 6 [Source:NCBI gene (formerly Entrezgene);Acc:843597]; symbol=TRFL6; hit=AT1G72650; species=arabidopsis; confidence=medium
ArabidopsisAT1G72650 (TRFL6)
TRF-like 6 [Source:NCBI gene (formerly Entrezgene);Acc:843597]
identity=36; qcov=1.19; evalue=8.88e-90; confidence=medium
RiceOs02g0776700
-
identity=37.2; qcov=1.03; evalue=3.66e-89; confidence=medium
GO-
KEGG-
PfamPF00249 (Myb_DNA-binding); PF13921 (Myb_DNA-bind_6)
InterPro-
eggNOG-
NRGeneID:131013123

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057797124.1
2 Chromosome 染色体 0.00000 XP_057797124.1
3 Centromere 着丝粒 0.00000 XP_057797124.1
4 Chromatin 染色质 0.00000 XP_057797124.1
5 Telomere 端粒 0.00000 XP_057797124.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:66125254 G A EMS_canonical_SNV CDS_variant 5 A15,B103,B20,B54,C44
Chr2:66125671 G A EMS_canonical_SNV CDS_variant 1 D10
Chr2:66125709 G A EMS_canonical_SNV CDS_variant 1 B69
Chr2:66126986 A AT 1bp_insertion frameshift_variant 1 D11
Chr2:66126986 A AT 1bp_insertion CDS_variant 1 D11
Chr2:66126988 T TTA 2bp_insertion frameshift_variant 1 D11
Chr2:66126988 T TTA 2bp_insertion CDS_variant 1 D11
Chr2:66127028 G A EMS_canonical_SNV CDS_variant 2 B130,B137
Chr2:66127166 A AT 1bp_insertion frameshift_variant 8 A11,B111,B13,B45,C11,C49,C69,D11
Chr2:66127185 CG C 1bp_deletion frameshift_variant 7 A11,B111,B13,B45,C11,C49,C69
Chr2:66127297 G A EMS_canonical_SNV CDS_variant 2 C35,C81
Chr2:66127331 C CA 1bp_insertion frameshift_variant 1 D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797124.1
573 aa
N
1
286
573
Myb_DNA-binding
Myb_DNA-bind_6
C
PF00249 Myb_DNA-binding 452-501 aa PF13921 Myb_DNA-bind_6 454-509 aa
XP_057797125.1
567 aa
N
1
284
567
Myb_DNA-binding
Myb_DNA-bind_6
C
PF00249 Myb_DNA-binding 446-495 aa PF13921 Myb_DNA-bind_6 448-503 aa
XP_057797126.1
565 aa
N
1
282
565
Myb_DNA-binding
Myb_DNA-bind_6
C
PF00249 Myb_DNA-binding 452-501 aa PF13921 Myb_DNA-bind_6 454-509 aa
XP_057797127.1
559 aa
N
1
280
559
Myb_DNA-binding
Myb_DNA-bind_6
C
PF00249 Myb_DNA-binding 446-495 aa PF13921 Myb_DNA-bind_6 448-503 aa
XP_057797128.1
541 aa
N
1
270
541
Myb_DNA-binding
Myb_DNA-bind_6
C
PF00249 Myb_DNA-binding 452-501 aa PF13921 Myb_DNA-bind_6 454-509 aa
XP_057797129.1
541 aa
N
1
270
541
Myb_DNA-binding
Myb_DNA-bind_6
C
PF00249 Myb_DNA-binding 452-501 aa PF13921 Myb_DNA-bind_6 454-509 aa
XP_057797130.1
535 aa
N
1
268
535
Myb_DNA-binding
Myb_DNA-bind_6
C
PF00249 Myb_DNA-binding 446-495 aa PF13921 Myb_DNA-bind_6 448-503 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057797124.1 Pfam PF00249 Myb_DNA-binding Domain 452 501 3.1e-08 34.3 Myb-like DNA-binding domain
XP_057797124.1 Pfam PF13921 Myb_DNA-bind_6 Domain 454 509 5.5e-06 27.2 Myb-like DNA-binding domain
XP_057797125.1 Pfam PF00249 Myb_DNA-binding Domain 446 495 3.1e-08 34.3 Myb-like DNA-binding domain
XP_057797125.1 Pfam PF13921 Myb_DNA-bind_6 Domain 448 503 5.4e-06 27.2 Myb-like DNA-binding domain
XP_057797126.1 Pfam PF00249 Myb_DNA-binding Domain 452 501 3e-08 34.3 Myb-like DNA-binding domain
XP_057797126.1 Pfam PF13921 Myb_DNA-bind_6 Domain 454 509 5.4e-06 27.2 Myb-like DNA-binding domain
XP_057797127.1 Pfam PF00249 Myb_DNA-binding Domain 446 495 3e-08 34.4 Myb-like DNA-binding domain
XP_057797127.1 Pfam PF13921 Myb_DNA-bind_6 Domain 448 503 5.3e-06 27.2 Myb-like DNA-binding domain
XP_057797128.1 Pfam PF00249 Myb_DNA-binding Domain 452 501 2.9e-08 34.4 Myb-like DNA-binding domain
XP_057797128.1 Pfam PF13921 Myb_DNA-bind_6 Domain 454 509 5.1e-06 27.3 Myb-like DNA-binding domain
XP_057797129.1 Pfam PF00249 Myb_DNA-binding Domain 452 501 2.9e-08 34.4 Myb-like DNA-binding domain
XP_057797129.1 Pfam PF13921 Myb_DNA-bind_6 Domain 454 509 5.1e-06 27.3 Myb-like DNA-binding domain
XP_057797130.1 Pfam PF00249 Myb_DNA-binding Domain 446 495 2.8e-08 34.4 Myb-like DNA-binding domain
XP_057797130.1 Pfam PF13921 Myb_DNA-bind_6 Domain 448 503 5e-06 27.3 Myb-like DNA-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA
XM_057941141.1
CAGTTAATTCGATAGTTAGGATTCCGGGCTCTTTTGGTAGTACAACCAGCGTGCTCACGAAGCAAAAGCAGAAAACCTCACTCTGAACTGAAAAATTCGAAATCCCCAAACTCATAAAAAATATATTCACTGAAAATTTTCACTTCTCCGTGGCCGGATTATTCTATTTATTTGATCGGAGTTCGGGTACAATTTTGTGTCATTGTATCTGAGTGGCATATGCTTTGTTATCAATGGAAACAGTGGTTGATATGCTGGGA...
XM_057941142.1
AATTCGATAGTTAGGATTCCGGGCTCTTTTGGTAGTACAACCAGCGTGCTCACGAAGCAAAAGCAGAAAACCTCACTCTGAACTGAAAAATTCGAAATCCCCAAACTCATAAAAAATATATTCACTGAAAATTTTCACTTCTCCGTGGCCGGATTATTCTATTTATTTGATCGGAGTTCGGGTACAATTTTGTGTGGTTGATATGCTGGGAGATGAGGAAGCTAGAGATGAAGATTTTCGGTCGCAAGACACTGCAGACC...

CDS

7 records

下载 CDS FASTA
LOC131013123
ATGGAAACAGTGGTTGATATGCTGGGAGATGAGGAAGCTAGAGATGAAGATTTTCGGTCGCAAGACACTGCAGACCCTATTGTTTACCAGCTCGTTCGGGTTGATGGCAATGGGAGATTAGTACCTGCAACAGATGATGAAGTTATAGCAGTCGAAGACTTGATTGAAGATGATAAGTGCAAAGTAAGAAATATAGACGATGGCCAGACTCTAGGATGCAGTATAAATAGTGGGAGTAAACCATGTGCTTCAAAAACAGC...
LOC131013123
ATGGAAACAGTGGTTGATATGCTGGGAGATGAGGAAGCTAGAGATGAAGATTTTCGGTCGCAAGACACTGCAGACCCTATTGTTTACCAGCTCGTTCGGGTTGATGGCAATGGGAGATTAGTACCTGCAACAGATGATGAAGTTATAGCAGTCGAAGACTTGATTGAAGATGATAAGTGCAAAGTAAGAAATATAGACGATGGCCAGACTCTAGGATGCAGTATAAATAGTGGGAGTAAACCATGTGCTTCAAAAACAGC...

Protein

7 records

下载 Protein FASTA
XP_057797124.1
METVVDMLGDEEARDEDFRSQDTADPIVYQLVRVDGNGRLVPATDDEVIAVEDLIEDDKCKVRNIDDGQTLGCSINSGSKPCASKTAEFESSGQTQLKVLEVGREKQILSPEAEIGYIEVDVKHEDKISKLVPNAIDVSECQSGSVEGCSKHLDESNKAKTSNSPVGADFRPDFSLLNGEIHLDNLSVKDLQEIFHATFGRQTSVKDKEWLKRRIIMGLTNSCDFSTTTLVISDNRVVKKGKDETSQSMDGSVLVDCVVT...
XP_057797125.1
MLGDEEARDEDFRSQDTADPIVYQLVRVDGNGRLVPATDDEVIAVEDLIEDDKCKVRNIDDGQTLGCSINSGSKPCASKTAEFESSGQTQLKVLEVGREKQILSPEAEIGYIEVDVKHEDKISKLVPNAIDVSECQSGSVEGCSKHLDESNKAKTSNSPVGADFRPDFSLLNGEIHLDNLSVKDLQEIFHATFGRQTSVKDKEWLKRRIIMGLTNSCDFSTTTLVISDNRVVKKGKDETSQSMDGSVLVDCVVTSALETD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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