Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G004381

染色体: Chr02 坐标: 66165166-66169186 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G004381
名称SmilChr02G004381
描述phospholipid:diacylglycerol acyltransferase 1-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向66165166 - 66169186 / +

ID 对照

NCBI Gene IDLOC131013127
GeneID131013127
locus_tag-
NCBI NameLOC131013127
原始查询SmilChr02G004381

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述phospholipid:diacylglycerol acyltransferase 1-like
产物phospholipid:diacylglycerol acyltransferase 1-like
ArabidopsisAT5G13640 (PDAT)
phospholipid:diacylglycerol acyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:831208]
identity=74.4; qcov=1; evalue=0; confidence=high
RiceOs09g0444200 (P0046G12.50-1)
-
identity=75.9; qcov=1.01; evalue=0; confidence=high
GOGO:0005737 (cytoplasm); GO:0006629 (lipid metabolic process); GO:0008374 (GO:0008374)
KEGGsmil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
PfamPF02450 (LCAT)
InterPro-
eggNOG-
NRGeneID:131013127

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Endoplasmic reticulum 内质网 0.80000 XP_057797137.1
2 Endoplasmic reticulum membrane 内质网膜 0.60000 XP_057797137.1
3 Golgi apparatus 高尔基体 0.40000 XP_057797137.1
4 Nucleus 细胞核 0.00000 XP_057797137.1
5 Chromosome 染色体 0.00000 XP_057797137.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:66165590 G A EMS_canonical_SNV CDS_variant 2 B109,B34
Chr2:66167319 C T EMS_canonical_SNV CDS_variant 1 D11
Chr2:66167422 C T EMS_canonical_SNV CDS_variant 1 D6
Chr2:66167915 G A EMS_canonical_SNV CDS_variant 4 B136,B56,B96,C20
Chr2:66168311 C T EMS_canonical_SNV CDS_variant 1 B14
Chr2:66168584 C T EMS_canonical_SNV CDS_variant 2 B109,B34
Chr2:66168773 G A EMS_canonical_SNV CDS_variant 2 B130,B137
Chr2:66168806 G A EMS_canonical_SNV CDS_variant 5 B109,B34,B84,C37,C82
Chr2:66168817 C T EMS_canonical_SNV CDS_variant 1 B86
Chr2:66168915 G A EMS_canonical_SNV CDS_variant 1 B66

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057797137.1
658 aa
N
1
329
658
LCAT
LCAT
C
PF02450 LCAT 120-371 aa PF02450 LCAT 459-618 aa
XP_057797138.1
516 aa
N
1
258
516
LCAT
LCAT
C
PF02450 LCAT 3-229 aa PF02450 LCAT 317-476 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057797137.1 Pfam PF02450 LCAT Family 120 371 1.8e-63 215.9 Lecithin:cholesterol acyltransferase
XP_057797137.1 Pfam PF02450 LCAT Family 459 618 1.8e-63 215.9 Lecithin:cholesterol acyltransferase
XP_057797138.1 Pfam PF02450 LCAT Family 3 229 9.6e-59 200.3 Lecithin:cholesterol acyltransferase
XP_057797138.1 Pfam PF02450 LCAT Family 317 476 9.6e-59 200.3 Lecithin:cholesterol acyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057941154.1
AACAGTAATAAAAAAAGTGGCAAAAAAAAGAAAATAAAAGGAATGTGTTCATAACTGCAAACAGCAGAAATTCAACCGCTAAACACAATCCACCACTTCCTCTCTCTCTCTCACAGTCTCACTCCATCCACCCAATCCCCAGCCCCTTCCAGAACTCCCGCCATCTTTCCTCCGCCGCAGCGCCACTGATCCCACCATCACACAATCTTCCAATCAATGCAAGCACCAACTAGCAACTATGCCTAGCTATTTGTTGGCTG...
XM_057941155.1
GAGGATACATGTCGCTGCTGAGGAGAAGAAGGGGCGGGCAGGATGAGCCGGGAAGGGCGCCCGACGCGGAGGAGAGGAAGCCGGAGCACCGGAGAGCCGAGAAGAAGTGGTCTTGCTTGGACAACTGCTGCTGGTTCATCGGTACGTCACGGATGCGATAAGGGGCCCACTGCCCGATCCGCCCGGGCTGAAGCTGAAGAAGGAGGGGCTGGCGGCGAAGCACCCCGTCGTCTTCGTGCCCGGGATTGTGACCGCCGGAT...

CDS

2 records

下载 CDS FASTA
LOC131013127
ATGTCGCTGCTGAGGAGAAGAAGGGGCGGGCAGGATGAGCCGGGAAGGGCGCCCGACGCGGAGGAGAGGAAGCCGGAGCACCGGAGAGCCGAGAAGAAGTGGTCTTGCTTGGACAACTGCTGCTGGTTCATCGGGTGCGTGTGCGTTACGTGGTGGGTGCTGCTCTTCTTGTATAATTTGATGCCTTCCTCTTTTCCGCAGTACGTCACGGATGCGATAAGGGGCCCACTGCCCGATCCGCCCGGGCTGAAGCTGAAGAA...
LOC131013127
ATGTCGTTGGACAACGAGACTGGTTTGGATCCACCTGGTGTGAGGGTCAGACCTGTGACTGGTCTAGTAGCTGCAGATTACTTTGCACCGGGATACTTTGTGTGGGCGGTTCTGATTGCAAATCTTGCTCAGATTGGATACGAGGAGAAGACTATGTACATGGCTACGTATGATTGGAGACTCTCGTTTCAGAACACAGAGGTGCGCGACCAGTCACTCAGTAGGATTAAGAGTAACATAGAACTTATGGTTTCTACAAA...

Protein

2 records

下载 Protein FASTA
XP_057797137.1
MSLLRRRRGGQDEPGRAPDAEERKPEHRRAEKKWSCLDNCCWFIGCVCVTWWVLLFLYNLMPSSFPQYVTDAIRGPLPDPPGLKLKKEGLAAKHPVVFVPGIVTAGLELWEGHQCAEGLFRKRLWGGTFGSVYKRPLCWVEHMSLDNETGLDPPGVRVRPVTGLVAADYFAPGYFVWAVLIANLAQIGYEEKTMYMATYDWRLSFQNTEVRDQSLSRIKSNIELMVSTNGGNKAVIIPHSMGVLYFLHFMKWVEVPAPMG...
XP_057797138.1
MSLDNETGLDPPGVRVRPVTGLVAADYFAPGYFVWAVLIANLAQIGYEEKTMYMATYDWRLSFQNTEVRDQSLSRIKSNIELMVSTNGGNKAVIIPHSMGVLYFLHFMKWVEVPAPMGGGGGPDWCAKHIKAVLNIGGPFLGVPKAVSGLFSAEAKDIAVARAIAPGVLDQDLFHIQTLQYLMKMTRTWDSTMSMIPKGGDTIWGDLDCSPEDSYIPSRRRRNTTDEPILTEDESKETKPKRRHYGRIISFGKDIAQADS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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