当前解析结果
SmilChr02G004387| 统一新 Gene ID | SmilChr02G004387 |
|---|---|
| 名称 | SmilChr02G004387 |
| 描述 | ACT domain-containing protein ACR2-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 66239796 - 66241119 / + |
| NCBI Gene ID | LOC131013134 |
|---|---|
| GeneID | 131013134 |
| locus_tag | - |
| NCBI Name | LOC131013134 |
| 原始查询 | SmilChr02G004387 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ACT domain-containing protein ACR2-like |
| 产物 | ACT domain-containing protein ACR2-like |
| Arabidopsis | AT5G25320 (AT5G25320)ACT-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832604] identity=52.9; qcov=0.977; evalue=6.67e-87; confidence=high |
| Rice | Os02g0555600- identity=44.2; qcov=0.906; evalue=5.57e-59; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF13740 (ACT_6); PF22754 (bHLH-TF_ACT-like_plant); PF24931 (ACT_ACR9_3rd); PF26956 (ACT_ACR_D1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013134 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057797145.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057797146.1 |
| 3 | Cytosol | 细胞质基质 | 0.80000 | XP_057797145.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057797145.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057797145.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:66239993 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B137,C54 |
Chr2:66239996 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B104,B65,B77,B88,C63 |
Chr2:66240316 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B104,B65,B77,B9,C63 |
Chr2:66240319 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A14,A5,B68,C60 |
Chr2:66240463 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B140,C40,C87,D6 |
Chr2:66240485 |
GA |
G |
1bp_deletion | frameshift_variant | 98 | A1,A10,A14,A16,A2,A4,A7,A8,B106,B108,B109,B11,B115,B118,B124,B125,B128,B130,B139,B15,B16,B17,B18,B2,B20,B25,B38,B39,B40,B41,B47,B49,B51,B53,B56,B58,B59,B6,B63,B64,B65,B69,B70,B71,B72,B76,B77,B8,B81,B83,B84,B86,B87,B9,B90,B91,B92,B95,B96,B97,B99,C12,C13,C15,C18,C20,C22,C24,C25,C26,C27,C28,C29,C3,C30,C31,C33,C35,C37,C39,C4,C44,C46,C47,C51,C55,C56,C58,C6,C62,C70,C73,C75,C77,C84,D1,D8,D9 |
Chr2:66240504 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr2:66240593 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A13,B2,B61,B91,C85 |
Chr2:66240623 |
C |
CG |
1bp_insertion | frameshift_variant | 42 | A10,A13,A21,A23,A25,A5,B110,B112,B117,B133,B136,B137,B22,B45,B47,B48,B50,B51,B59,B61,B70,B74,B75,B82,B87,B91,C19,C20,C22,C38,C54,C59,C61,C64,C68,C70,C79,C81,D11,D2,D6,D9 |
Chr2:66240626 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A15,B54,C86 |
Chr2:66240657 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B125,B39,B95,C39,C72 |
Chr2:66240660 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A3,A9,B85 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797145.1PF24931
ACT_ACR9_3rd 33-101 aa
PF22754
bHLH-TF_ACT-like_plant 36-107 aa
PF26956
ACT_ACR_D1 37-110 aa
PF13740
ACT_6 123-171 aa
XP_057797146.1PF24931
ACT_ACR9_3rd 29-97 aa
PF22754
bHLH-TF_ACT-like_plant 32-103 aa
PF26956
ACT_ACR_D1 33-106 aa
PF13740
ACT_6 119-167 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797145.1 |
Pfam | PF24931 |
ACT_ACR9_3rd | Domain | 33 | 101 | 2e-06 | 28.5 | ACR9-like, ACT-like domain |
XP_057797145.1 |
Pfam | PF22754 |
bHLH-TF_ACT-like_plant | Domain | 36 | 107 | 9.3e-10 | 39.2 | Plant bHLH transcription factor, ACT-like domain |
XP_057797145.1 |
Pfam | PF26956 |
ACT_ACR_D1 | Domain | 37 | 110 | 2e-32 | 111.6 | ACR family N-terminal ACT domain |
XP_057797145.1 |
Pfam | PF13740 |
ACT_6 | Domain | 123 | 171 | 6.8e-07 | 29.8 | ACT domain |
XP_057797146.1 |
Pfam | PF24931 |
ACT_ACR9_3rd | Domain | 29 | 97 | 2e-06 | 28.5 | ACR9-like, ACT-like domain |
XP_057797146.1 |
Pfam | PF22754 |
bHLH-TF_ACT-like_plant | Domain | 32 | 103 | 9e-10 | 39.2 | Plant bHLH transcription factor, ACT-like domain |
XP_057797146.1 |
Pfam | PF26956 |
ACT_ACR_D1 | Domain | 33 | 106 | 6.5e-33 | 113.2 | ACR family N-terminal ACT domain |
XP_057797146.1 |
Pfam | PF13740 |
ACT_6 | Domain | 119 | 167 | 6.6e-07 | 29.8 | ACT domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。