Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004388`

染色体: Chr02 坐标: 66244727-66248655 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004388`
名称	SmilChr02G004388
描述	telomere repeat-binding factor 4-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	66244727 - 66248655 / `+`

ID 对照

NCBI Gene ID	`LOC131013139`
GeneID	`131013139`
locus_tag	`-`
NCBI Name	`LOC131013139`
原始查询	`SmilChr02G004388`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	telomere repeat-binding factor 4-like
产物	telomere repeat-binding factor 4-like
Arabidopsis	`AT1G72740` (AT1G72740) Homeodomain-like/winged-helix DNA-binding family protein [Source:NCBI gene (formerly Entrezgene);Acc:843606] identity=43.4; qcov=0.967; evalue=2.27e-58; confidence=medium
Rice	`Os01g0708000` (myb28) - identity=39.7; qcov=1.01; evalue=5.21e-46; confidence=medium
GO	GO:0000786 (nucleosome); GO:0003691 (double-stranded telomeric DNA binding); GO:0006334 (nucleosome assembly)
KEGG	-
Pfam	PF00249 (Myb_DNA-binding); PF00538 (Linker_histone); PF13921 (Myb_DNA-bind_6)
InterPro	-
eggNOG	-
NR	GeneID:131013139

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057797155.1`
2	Chromosome	染色体	0.00000	`XP_057797155.1`
3	Centromere	着丝粒	0.00000	`XP_057797155.1`
4	Chromatin	染色质	0.00000	`XP_057797155.1`
5	Telomere	端粒	0.00000	`XP_057797155.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:66245951`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr2:66246056`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B131,B95,C14
`Chr2:66246517`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C31,C7
`Chr2:66247297`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:66247816`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B10
`Chr2:66247891`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A7,B2,B73,C70,C79
`Chr2:66248001`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B11,C30,C36,C76,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797155.1

279 aa

140

279

Myb_DNA-binding

Myb_DNA-bind_6

Linker_histone

PF00249 Myb_DNA-binding 5-56 aa PF13921 Myb_DNA-bind_6 8-55 aa PF00538 Linker_histone 111-169 aa

XP_057797156.1

274 aa

137

274

Myb_DNA-binding

Myb_DNA-bind_6

Linker_histone

PF00249 Myb_DNA-binding 5-56 aa PF13921 Myb_DNA-bind_6 8-55 aa PF00538 Linker_histone 111-169 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797155.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	5	56	3.9e-09	37.2	Myb-like DNA-binding domain
`XP_057797155.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	8	55	2.1e-07	31.8	Myb-like DNA-binding domain
`XP_057797155.1`	Pfam	`PF00538`	Linker_histone	Domain	111	169	1.3e-13	51.7	linker histone H1 and H5 family
`XP_057797156.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	5	56	3.7e-09	37.3	Myb-like DNA-binding domain
`XP_057797156.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	8	55	1.7e-07	32.0	Myb-like DNA-binding domain
`XP_057797156.1`	Pfam	`PF00538`	Linker_histone	Domain	111	169	1.3e-13	51.7	linker histone H1 and H5 family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057941172.1
TGACAGATAGGAAACAACATCAGCTGCCACGCCACGTGTCTGGCTGCATCATATAAAGCGGCTCAGTATAGAGGTCCACGAAGCGGGAGCCTCAGATACTCCGAGACTGTGGTGGCGCTCCGCCGGTCGCCGCCGTAAATCTGCATAATCAGGACTTCGCGAATGGGGAATCAGAAGCTCAAGTGGACGTCGGAGGAAGAGCAGGCGCTGAAGGCGGGAGTGGCCAAGTATGGCGCCGGGAAGTGGAAGAACATTCTCGT...

XM_057941173.1
GACAGATAGGAAACAACATCAGCTGCCACGCCACGTGTCTGGCTGCATCATATAAAGCGGCTCAGTATAGAGGTCCACGAAGCGGGAGCCTCAGATACTCCGAGACTGTGGTGGCGCTCCGCCGGTCGCCGCCGTAAATCTGCATAATCAGGACTTCGCGAATGGGGAATCAGAAGCTCAAGTGGACGTCGGAGGAAGAGCAGGCGCTGAAGGCGGGAGTGGCCAAGTATGGCGCCGGGAAGTGGAAGAACATTCTCGTA...

CDS

2 records

下载 CDS FASTA

LOC131013139
ATGGGGAATCAGAAGCTCAAGTGGACGTCGGAGGAAGAGCAGGCGCTGAAGGCGGGAGTGGCCAAGTATGGCGCCGGGAAGTGGAAGAACATTCTCGTAGATTCCGAGTTCAAGCACAAACTCGCCAACCGATCGAATGTTGACCTCAAGGACAAATGGCGGAATATGGGTGGACAAGGCTCGGGAGCTAATGCTATGACTCCCAGAGCAAAGTCAGTCACGAATAGTGCTCTGACACCCAAAGCTCAGAGTTCAGCTTT...

Protein

2 records

下载 Protein FASTA

XP_057797155.1
MGNQKLKWTSEEEQALKAGVAKYGAGKWKNILVDSEFKHKLANRSNVDLKDKWRNMGGQGSGANAMTPRAKSVTNSALTPKAQSSALILVPIENVNDKPPQSPEGVKNSHKYNEMILEALSSIKDRNGSDFVSILRFIEKKYEVPQNFRRLLSSKLRKLVLQGTVEKVQKHYKIKHASLGIKTPLPKQKVVRSKPRRDTRPRISIEMENAAKIAAHKIAEAENKAFLAAEAVKESERLLQMAEEADAVVLHLKQIFEQRK...

XP_057797156.1
MGNQKLKWTSEEEQALKAGVAKYGAGKWKNILVDSEFKHKLANRSNVDLKDKWRNMGGQGSGANAMTPRAKSVTNSALTPKAQSSALILVPIENVNDKPPQSPEGVKNSHKYNEMILEALSSIKDRNGSDFVSILRFIEKKYEVPQNFRRLLSSKLRKLVLQGTVEKVQKHYKIKHASLGIKTPLPKQKVVRSKPRRDTRPRISIEMENAAKIAAHKIAEAENKAFLAAEAVKESERLLQMAEEADAVVLHLKQIFEQRK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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