Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004389`

染色体: Chr02 坐标: 66248834-66251388 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004389`
名称	SmilChr02G004389
描述	glycylpeptide N-tetradecanoyltransferase 1-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	66248834 - 66251388 / `-`

ID 对照

NCBI Gene ID	`LOC131013138`
GeneID	`131013138`
locus_tag	`-`
NCBI Name	`LOC131013138`
原始查询	`SmilChr02G004389`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glycylpeptide N-tetradecanoyltransferase 1-like
产物	glycylpeptide N-tetradecanoyltransferase 1-like
Arabidopsis	`AT5G57020` (NMT1) myristoyl-CoA:protein N-myristoyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:835805] identity=78.3; qcov=1; evalue=0; confidence=high
Rice	`Os01g0708100` - identity=75.2; qcov=0.954; evalue=0; confidence=high
GO	GO:0004379 (glycylpeptide N-tetradecanoyltransferase activity); GO:0005737 (cytoplasm); GO:0018008 (N-terminal peptidyl-glycine N-myristoylation)
KEGG	-
Pfam	PF01233 (NMT); PF02799 (NMT_C)
InterPro	-
eggNOG	-
NR	GeneID:131013138

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057797152.1`
2	Cytosol	细胞质基质	1.00000	`XP_057797152.1`
3	Nucleus	细胞核	0.20000	`XP_057797152.1`
4	Chromosome	染色体	0.00000	`XP_057797152.1`
5	Centromere	着丝粒	0.00000	`XP_057797152.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:66249061`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr2:66249164`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B109,B34
`Chr2:66249276`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B24,C75,D1
`Chr2:66249445`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B24
`Chr2:66249445`	`GC`	`G`	1bp_deletion	CDS_variant	1	B24
`Chr2:66249460`	`TA`	`T`	1bp_deletion	frameshift_variant	1	C14
`Chr2:66249460`	`TA`	`T`	1bp_deletion	CDS_variant	1	C14
`Chr2:66249520`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr2:66249652`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr2:66249700`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B132,B67
`Chr2:66249707`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C54
`Chr2:66249821`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C31,C7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797152.1

432 aa

216

432

NMT

NMT_C

PF01233 NMT 69-228 aa PF02799 NMT_C 242-421 aa

XP_057797154.1

432 aa

216

432

NMT

NMT_C

PF01233 NMT 69-228 aa PF02799 NMT_C 242-421 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797152.1`	Pfam	`PF01233`	NMT	Domain	69	228	8.8e-78	260.4	Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain
`XP_057797152.1`	Pfam	`PF02799`	NMT_C	Domain	242	421	4e-81	272.2	Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain
`XP_057797154.1`	Pfam	`PF01233`	NMT	Domain	69	228	8.8e-78	260.4	Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain
`XP_057797154.1`	Pfam	`PF02799`	NMT_C	Domain	242	421	4e-81	272.2	Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057941169.1
TTTTTTTAAGTTTCCGAACATAACGAGTTTAGCTTTTAAGAATTCGTGTTTAAGCTCAAAAGTTATTCGAGATTTGGATTATTTTTCTTTCAAGTAGTTTCTCCTTCACGAGCTAGATCAACTCATTCAAACCTGCCGGCTCTACCTAGGAGGTGATTTTATTGTTTCAAAATTTTAATTAAATTCATTTTAGATGTATGAATTTACAAAAATACCCATGGACAAAATGGGCTATCCTTTTTATGCGAAGCGAAGATCAA...

XM_057941171.1
AATATTCCAATTCCAGTGCATTAAAAACTCTTCTGATTTCGTCTCTCGTCGTTCCCGATGCCCCTTTTCTCTCTCTAATAAATTCTCACTCCACATTTAAATCTCTCCCTCACTCTCTCACACTCTCTCGATCTTCCAGCCAAGCTCGCTAAGAATCCTGGGCCTAAGTTGAGGTACCAGCTCTCTATTTCTCACGTTGCGATTATTTGAAAAGTAAGTCTTTGACAATGGCTGGTGACAATGAACCCACTGAGAATCAT...

CDS

2 records

下载 CDS FASTA

LOC131013138
ATGGCTGGTGACAATGAACCCACTGAGAATCATGTTACATCCGGCGACAATAGCGTACCCCCAGAAAACGAGAGTGAGATATCGATTGATGCGTTGGCAAGGAAGGTGCAAGAATCTTTGTCACTTGCAAAGAGGCATAAGTTTTGGGAAACCCAGCCCGTAGGCCAGTTCAAAGAACTCGGTGATACGAGCTTGCCTGAAGGTCCGATTGAGCAGCCAACACCACTTTCCGAGGTCAAGCAAGAGCCCTACAACCTCCC...

Protein

2 records

下载 Protein FASTA

XP_057797152.1
MAGDNEPTENHVTSGDNSVPPENESEISIDALARKVQESLSLAKRHKFWETQPVGQFKELGDTSLPEGPIEQPTPLSEVKQEPYNLPAPYEWITCDIDSEEVCAEVYNLLTNNYVEDDENMFRFNYSKEFLRWALRPPGYFRSWHIGVRVKSSKKLVAFITGVPARIRVRDTVVLMAEVNFLCVHKKLRSKRLAPVMIKEVTRRVHLENIWQAAYTAGVVLPTPVTTCQYWHRSLNPKKLIDVGFSRLGARMTMSRTIKL...

XP_057797154.1
MAGDNEPTENHVTSGDNSVPPENESEISIDALARKVQESLSLAKRHKFWETQPVGQFKELGDTSLPEGPIEQPTPLSEVKQEPYNLPAPYEWITCDIDSEEVCAEVYNLLTNNYVEDDENMFRFNYSKEFLRWALRPPGYFRSWHIGVRVKSSKKLVAFITGVPARIRVRDTVVLMAEVNFLCVHKKLRSKRLAPVMIKEVTRRVHLENIWQAAYTAGVVLPTPVTTCQYWHRSLNPKKLIDVGFSRLGARMTMSRTIKL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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