Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004392`

染色体: Chr02 坐标: 66261374-66266070 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004392`
名称	SmilChr02G004392
描述	casein kinase 1-like protein 2
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	66261374 - 66266070 / `-`

ID 对照

NCBI Gene ID	`LOC131013137`
GeneID	`131013137`
locus_tag	`-`
NCBI Name	`LOC131013137`
原始查询	`SmilChr02G004392`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	casein kinase 1-like protein 2
产物	casein kinase 1-like protein 2
Arabidopsis	`AT1G72710` (CKL2) casein kinase 1-like protein 2 [Source:NCBI gene (formerly Entrezgene);Acc:843603] identity=64.3; qcov=1.08; evalue=9.06e-166; confidence=high
Rice	`Os05g0593800` - identity=62.9; qcov=1.09; evalue=6.12e-171; confidence=high
GO	GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0006897 (endocytosis); GO:0007165 (signal transduction); GO:0018105 (peptidyl-serine phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF17667 (Pkinase_fungal)
InterPro	-
eggNOG	-
NR	GeneID:131013137

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057797150.1`
2	Cytoplasm	细胞质	1.00000	`XP_057797151.1`
3	Cytosol	细胞质基质	1.00000	`XP_057797151.1`
4	Nucleoplasm	核质	0.20000	`XP_057797150.1`
5	Cell projection	细胞突起	0.20000	`XP_057797151.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:66261851`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A18,B136,B56,B96,C20
`Chr2:66261906`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B25
`Chr2:66261971`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B112,B26,C8
`Chr2:66262733`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B45
`Chr2:66264373`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B112,B129,B26,C8
`Chr2:66264489`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A15,B103,B127,B20,C44

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797150.1

437 aa

218

437

Pkinase

PK_Tyr_Ser-Thr

Pkinase_fungal

PF00069 Pkinase 10-226 aa PF07714 PK_Tyr_Ser-Thr 10-269 aa PF17667 Pkinase_fungal 119-205 aa

XP_057797151.1

356 aa

178

356

PK_Tyr_Ser-Thr

Pkinase

Pkinase_fungal

PF07714 PK_Tyr_Ser-Thr 8-188 aa PF00069 Pkinase 11-145 aa PF17667 Pkinase_fungal 38-124 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797150.1`	Pfam	`PF00069`	Pkinase	Domain	10	226	3e-26	93.1	Protein kinase domain
`XP_057797150.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	10	269	8.5e-16	58.8	Protein tyrosine and serine/threonine kinase
`XP_057797150.1`	Pfam	`PF17667`	Pkinase_fungal	Domain	119	205	2.9e-08	33.6	Fungal protein kinase
`XP_057797151.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	8	188	2.1e-08	34.5	Protein tyrosine and serine/threonine kinase
`XP_057797151.1`	Pfam	`PF00069`	Pkinase	Domain	11	145	2.3e-16	60.7	Protein kinase domain
`XP_057797151.1`	Pfam	`PF17667`	Pkinase_fungal	Domain	38	124	2.1e-08	34.0	Fungal protein kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057941167.1
CTTTTTCTTTTTTAGGGAATCATTTAAGCCCCAAACACAAAAGGGGAAAAATCCAGAAAAAAAAAAAAAAACTGAAAAGTGAATCAAAGAAAAAAAAAAGTAATAGAGATATGAACAATTTTTTTTTTTTTTGAAGAAAGAGATATGAACAATTTAAAAAAAAAGGAAAAAAGAGATATGATTAAGTTAATAGTATTATTTGCTATTTCTTGGTGCTAAAGTTTTGGTGTGAAGGCGAAAAAAAAATTGTGTGTTCATTG...

XM_057941168.1
ATGTTGCTATCAAGCTCCTGGAATCCCAAATATTAAATGGTTTGGGATCGAAGGAGACTATAATGTTCTCGTCATGGACTTACTAGGGCCGAGCCTTGAGGACTTGTTTACCTTTTGTAGTAGGAAGTTGTCGTTGAAGACTGTTCTCATGCTTGCAGATCAGATGCTTAATCGGCTTGAGTATGTTCACTCTAAGTCTTTTCTGCATCGAGATCTTAAGCCTGACAACTTTCTCATGGGCTTGGGAAGGCGTGCAAATC...

CDS

2 records

下载 CDS FASTA

LOC131013137
ATGGAGCCGCGTGTGGGGAATAGGTTTCGGTTGGGTCGAAAAATTGGGAATGGCTCATTCGGAGAGATTTACTTAGGCACTAATATTCAGACGAATGAGGATGTTGCTATCAAGCTCGAAAATGTGAGGACAAGACATCCCCAATTGCTTTATGAGTCAAAGTTGTACAGATTACTTCAAGGAGGAACTGGAATCCCAAATATTAAATGGTTTGGGATCGAAGGAGACTATAATGTTCTCGTCATGGACTTACTAGGGCC...

LOC131013137
ATGGACTTACTAGGGCCGAGCCTTGAGGACTTGTTTACCTTTTGTAGTAGGAAGTTGTCGTTGAAGACTGTTCTCATGCTTGCAGATCAGATGCTTAATCGGCTTGAGTATGTTCACTCTAAGTCTTTTCTGCATCGAGATCTTAAGCCTGACAACTTTCTCATGGGCTTGGGAAGGCGTGCAAATCAGGTTTATGCCATTGACTTTGGGCTTGCCAAGAAATATAGAGATTCAAATCATCAACATATTCCATATAGAGA...

Protein

2 records

下载 Protein FASTA

XP_057797150.1
MEPRVGNRFRLGRKIGNGSFGEIYLGTNIQTNEDVAIKLENVRTRHPQLLYESKLYRLLQGGTGIPNIKWFGIEGDYNVLVMDLLGPSLEDLFTFCSRKLSLKTVLMLADQMLNRLEYVHSKSFLHRDLKPDNFLMGLGRRANQVYAIDFGLAKKYRDSNHQHIPYRENKNLTGTARFASINTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLQAGNKKQKYDRISEKKVQTSIESLCRGYPTEFASYFHYCRSLRFE...

XP_057797151.1
MDLLGPSLEDLFTFCSRKLSLKTVLMLADQMLNRLEYVHSKSFLHRDLKPDNFLMGLGRRANQVYAIDFGLAKKYRDSNHQHIPYRENKNLTGTARFASINTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLQAGNKKQKYDRISEKKVQTSIESLCRGYPTEFASYFHYCRSLRFEDKPDYSYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLANPPSRALGAGTSSMVPHANNDRESGLDEGKAPVRGRNVLNS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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