Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004393`

染色体: Chr02 坐标: 66266627-66273396 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004393`
名称	SmilChr02G004393
描述	probable phospholipid-transporting ATPase 4
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	66266627 - 66273396 / `-`

ID 对照

NCBI Gene ID	`LOC131013141`
GeneID	`131013141`
locus_tag	`-`
NCBI Name	`LOC131013141`
原始查询	`SmilChr02G004393`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable phospholipid-transporting ATPase 4
产物	probable phospholipid-transporting ATPase 4
Arabidopsis	`AT1G17500` (AT1G17500) ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:838324] identity=73.2; qcov=0.993; evalue=0; confidence=high
Rice	`Os06g0565900` - identity=77.6; qcov=0.528; evalue=0; confidence=medium
GO	GO:0000287 (magnesium ion binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0016887 (ATP hydrolysis activity); GO:0045332 (phospholipid translocation); GO:0140326 (ATPase-coupled intramembrane lipid carrier activity)
KEGG	-
Pfam	PF13246 (Cation_ATPase); PF16209 (PhoLip_ATPase_N); PF16212 (PhoLip_ATPase_C)
InterPro	-
eggNOG	-
NR	GeneID:131013141

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057797158.1`
2	Endosome	内体	0.60000	`XP_057797158.1`
3	Endosome membrane	内体膜	0.60000	`XP_057797158.1`
4	Cytoplasmic vesicle	细胞质囊泡	0.40000	`XP_057797158.1`
5	Secretory vesicle	Secretory vesicle	0.20000	`XP_057797158.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:66266877`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:66267067`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C26
`Chr2:66267122`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B45
`Chr2:66267270`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B139
`Chr2:66267270`	`TG`	`T`	1bp_deletion	CDS_variant	1	B139
`Chr2:66267274`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B139
`Chr2:66267274`	`TC`	`T`	1bp_deletion	CDS_variant	1	B139
`Chr2:66267377`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B25
`Chr2:66267497`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr2:66267668`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:66267945`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B135
`Chr2:66269246`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A19,B111,B118,B15,B45

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797158.1

1220 aa

610

1220

PhoLip_ATPase_N

Cation_ATPase

PhoLip_ATPase_C

PF16209 PhoLip_ATPase_N 43-110 aa PF13246 Cation_ATPase 536-729 aa PF16212 PhoLip_ATPase_C 904-1154 aa

XP_057797159.1

1220 aa

610

1220

PhoLip_ATPase_N

Cation_ATPase

PhoLip_ATPase_C

PF16209 PhoLip_ATPase_N 43-110 aa PF13246 Cation_ATPase 536-729 aa PF16212 PhoLip_ATPase_C 904-1154 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797158.1`	Pfam	`PF16209`	PhoLip_ATPase_N	Family	43	110	1.6e-25	89.3	Phospholipid-translocating ATPase N-terminal
`XP_057797158.1`	Pfam	`PF13246`	Cation_ATPase	Family	536	729	4.1e-17	63.3	P-type ATPase, cytoplasmic domain N
`XP_057797158.1`	Pfam	`PF16212`	PhoLip_ATPase_C	Family	904	1154	2.3e-86	290.4	Phospholipid-translocating P-type ATPase C-terminal
`XP_057797159.1`	Pfam	`PF16209`	PhoLip_ATPase_N	Family	43	110	1.6e-25	89.3	Phospholipid-translocating ATPase N-terminal
`XP_057797159.1`	Pfam	`PF13246`	Cation_ATPase	Family	536	729	4.1e-17	63.3	P-type ATPase, cytoplasmic domain N
`XP_057797159.1`	Pfam	`PF16212`	PhoLip_ATPase_C	Family	904	1154	2.3e-86	290.4	Phospholipid-translocating P-type ATPase C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057941175.1
AGGAGCGAGAGCGTGAACACTGGCGTTGTATCGGACTTCGAAGAGAGAGAAAACTCTGATTTTCTCGACACTCTCCCAAATCAATCAAATCTCCCTCTCTTCTACCACCCTGGCCTCTTCACTTTCTCTCTCTCTCTCTCTCCATCTCTCTCGTTCTTTACTTTCTTCTCTCTCATCCATTGCGATCTCTCAGTTGATTTTTCCATCTGGGCTTCCGCCAAATTCTAATCCTGATCAAGATTTTACCGGGTAAAAAAGTA...

XM_057941176.1
AGGAGCGAGAGCGTGAACACTGGCGTTGTATCGGACTTCGAAGAGAGAGAAAACTCTGATTTTCTCGACACTCTCCCAAATCAATCAAATCTCCCTCTCTTCTACCACCCTGGCCTCTTCACTTTCTCTCTCTCTCTCTCTCCATCTCTCTCGTTCTTTACTTTCTTCTCTCTCATCCATTGCGATCTCTCAGTTGATTTTTCCATCTGGGCTTCCGCCAAATTCTAATCCTGATCAAGATTTTACCGGGTAAAAAAGTA...

CDS

2 records

下载 CDS FASTA

LOC131013141
ATGGCTCGGGGTAGGATAAGAGCAAGGATCCGAAGGAGCCAGCTTTATACATTTGGTTGTTTCAGGCCACAAACTTCTGAAGAAGACGAGCCACATGACTTCCATGGACCTGGTTACTCGCGAGTGGTTTACTGCAACGAGCCTCGTATGCATGAGCACAAGCCTCTTAAATACTGCTCGAATTACATATCCACCACTAAGTACAATGTTGTTACGTTTCTGCCAAAGGCCATATTTGAACAATTCAGACGTGTTGCCAA...

Protein

2 records

下载 Protein FASTA

XP_057797158.1
MARGRIRARIRRSQLYTFGCFRPQTSEEDEPHDFHGPGYSRVVYCNEPRMHEHKPLKYCSNYISTTKYNVVTFLPKAIFEQFRRVANLYFLLAAVLSLTPISPFSALSMIAPLAFVVGLSMAKEALEDWRRFIQDMKVNLRKARVHKKDGLFGLKPWMKLRVGDVVKVEKDKFFPADLLLLSSSYEDGICYVETMNLDGETNLKVKRSLEVTLPLDDEQTFNEFKATIKCEDPNPSLYTFMGNFEYDRQIYPLDPSQILL...

XP_057797159.1
MARGRIRARIRRSQLYTFGCFRPQTSEEDEPHDFHGPGYSRVVYCNEPRMHEHKPLKYCSNYISTTKYNVVTFLPKAIFEQFRRVANLYFLLAAVLSLTPISPFSALSMIAPLAFVVGLSMAKEALEDWRRFIQDMKVNLRKARVHKKDGLFGLKPWMKLRVGDVVKVEKDKFFPADLLLLSSSYEDGICYVETMNLDGETNLKVKRSLEVTLPLDDEQTFNEFKATIKCEDPNPSLYTFMGNFEYDRQIYPLDPSQILL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器