Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004399`

染色体: Chr02 坐标: 66334013-66337484 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004399`
名称	SmilChr02G004399
描述	glyoxylate/succinic semialdehyde reductase 2, chloroplastic
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	66334013 - 66337484 / `-`

ID 对照

NCBI Gene ID	`LOC131013148`
GeneID	`131013148`
locus_tag	`-`
NCBI Name	`LOC131013148`
原始查询	`SmilChr02G004399`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glyoxylate/succinic semialdehyde reductase 2, chloroplastic
产物	glyoxylate/succinic semialdehyde reductase 2%2C chloroplastic
Arabidopsis	`AT1G17650` (GLYR2) glyoxylate reductase 2 [Source:NCBI gene (formerly Entrezgene);Acc:838342] identity=83.6; qcov=0.83; evalue=4.16e-180; confidence=high
Rice	`Os01g0574600` (OsGLYR2) - identity=82.4; qcov=0.807; evalue=8.17e-170; confidence=high
GO	GO:0009507 (chloroplast); GO:0030267 (glyoxylate reductase (NADPH) activity); GO:0050661 (NADP binding); GO:0051287 (NAD binding)
KEGG	smil00630 (Glyoxylate and dicarboxylate metabolism - Salvia miltiorrhiza (redroot sage)); smil00650 (Butanoate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF03446 (NAD_binding_2); PF03807 (F420_oxidored); PF14833 (NAD_binding_11)
InterPro	-
eggNOG	-
NR	GeneID:131013148

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057797166.1`
2	Cytosol	细胞质基质	1.00000	`XP_057797167.1`
3	Chloroplast stroma	叶绿体基质	1.00000	`XP_057797166.1`
4	Peroxisome	过氧化物酶体	0.20000	`XP_057797167.1`
5	Nucleus	细胞核	0.00000	`XP_057797166.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:66334551`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A10,C2,C32,C68
`Chr2:66335104`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B47,C31,C7
`Chr2:66335382`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B47,C31,C7
`Chr2:66335576`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C10,C81
`Chr2:66335666`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B115,C45,C83
`Chr2:66336011`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr2:66337113`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B25
`Chr2:66337120`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr2:66337205`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B136,B56,B96,C20

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797166.1

367 aa

184

367

F420_oxidored

NAD_binding_2

NAD_binding_11

PF03807 F420_oxidored 77-137 aa PF03446 NAD_binding_2 77-236 aa PF14833 NAD_binding_11 239-358 aa

XP_057797167.1

352 aa

176

352

F420_oxidored

NAD_binding_2

NAD_binding_11

PF03807 F420_oxidored 62-122 aa PF03446 NAD_binding_2 62-221 aa PF14833 NAD_binding_11 224-343 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797166.1`	Pfam	`PF03807`	F420_oxidored	Family	77	137	1.7e-05	26.0	NADP oxidoreductase coenzyme F420-dependent
`XP_057797166.1`	Pfam	`PF03446`	NAD_binding_2	Domain	77	236	7.6e-44	150.3	NAD binding domain of 6-phosphogluconate dehydrogenase
`XP_057797166.1`	Pfam	`PF14833`	NAD_binding_11	Domain	239	358	6.3e-28	98.2	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
`XP_057797167.1`	Pfam	`PF03807`	F420_oxidored	Family	62	122	1.6e-05	26.1	NADP oxidoreductase coenzyme F420-dependent
`XP_057797167.1`	Pfam	`PF03446`	NAD_binding_2	Domain	62	221	7.8e-44	150.3	NAD binding domain of 6-phosphogluconate dehydrogenase
`XP_057797167.1`	Pfam	`PF14833`	NAD_binding_11	Domain	224	343	5.9e-28	98.3	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057941183.1
GTGAGACCTTTATATACCACTTCTGACTGACCATCCATGGATGCCAGTTCACCGATTTTTGCGCTTTACGCGCAACGAATAACTATTTCTTGTCCATAAACTTTCAATTTACGGGTATAAACTGACAAAAGGTTCAAGATTTCGAAAAGGGATGGCCAAGATTCTGATGGTGAGGGCCAGTTGCAGCAGTAACCATTATCTACCCTATGCTGCACTTCTCTCTCCACAAAAAGCCATGGTTATGTGCTCAAGTTTTTCCC...

XM_057941184.1
GAGACCTTTATATACCACTTCTGACTGACCATCCATGGATGCCAGTTCACCGATTTTTGCGCTTTACGCGCAACGAATAACTATTTCTTGTCCATAAACTTTCAATTTACGGGTATAAACTGACAAAAGGTTCAAGATTTCGAAAAGGGATGGCCAAGATTCTGATGGTGAGGGCCAGTTGCAGCAGTAACCATTATCTACCCTATGCTGCACTTCTCTCTCCACAAAAAGCCATGGTTATGTGCTCAAGTTTTTCCCCA...

CDS

2 records

下载 CDS FASTA

LOC131013148
ATGGCCAAGATTCTGATGGTGAGGGCCAGTTGCAGCAGTAACCATTATCTACCCTATGCTGCACTTCTCTCTCCACAAAAAGCCATGGTTATGTGCTCAAGTTTTTCCCCAGTCCAATTTGGGGCTAAGCCCATTTCTTGCTCTCCCATTAAACCCCATTTCTGTATTAAAGTTAAGGGCTTCTCTTCTCAAGAATCCAATTCACCTACCAAAGATGAGCTCCCTACTCGAGTTGGTTTTTTGGGCCTCGGAATTATGGG...

LOC131013148
ATGCTGCACTTCTCTCTCCACAAAAAGCCATGGTTATGTGCTCAAGTTTTTCCCCAGTCCAATTTGGGGCTAAGCCCATTTCTTGCTCTCCCATTAAACCCCATTTCTGTATTAAAGTTAAGGGCTTCTCTTCTCAAGAATCCAATTCACCTACCAAAGGTACTTGTGGATGAGCTCCCTACTCGAGTTGGTTTTTTGGGCCTCGGAATTATGGGTTCTCCAATGGCGCAAAATCTCATAAAAGCAGGATGTGATGTCAC...

Protein

2 records

下载 Protein FASTA

XP_057797166.1
MAKILMVRASCSSNHYLPYAALLSPQKAMVMCSSFSPVQFGAKPISCSPIKPHFCIKVKGFSSQESNSPTKDELPTRVGFLGLGIMGSPMAQNLIKAGCDVTVWNRTKSKCDPLISLGAKYKPSPEEVAASCDVTFAMLADPESAVDVACGKQGAASGMSPGKGYVDVSTVDGPTSKLISARIKSTGALFLEAPVSGSKKPAEDGKLIFLTAGDKSLYEIAAPYLDLMGKSRFYLGDVGNGAAMKLVVNMIMGSMMASFS...

XP_057797167.1
MLHFSLHKKPWLCAQVFPQSNLGLSPFLALPLNPISVLKLRASLLKNPIHLPKVLVDELPTRVGFLGLGIMGSPMAQNLIKAGCDVTVWNRTKSKCDPLISLGAKYKPSPEEVAASCDVTFAMLADPESAVDVACGKQGAASGMSPGKGYVDVSTVDGPTSKLISARIKSTGALFLEAPVSGSKKPAEDGKLIFLTAGDKSLYEIAAPYLDLMGKSRFYLGDVGNGAAMKLVVNMIMGSMMASFSEGLLLSEKVGLDPSV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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