Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004409`

染色体: Chr02 坐标: 66408238-66411988 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004409`
名称	SmilChr02G004409
描述	protein HOTHEAD-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	66408238 - 66411988 / `-`

ID 对照

NCBI Gene ID	`LOC131013158`
GeneID	`131013158`
locus_tag	`-`
NCBI Name	`LOC131013158`
原始查询	`SmilChr02G004409`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein HOTHEAD-like
产物	protein HOTHEAD-like
Arabidopsis	`AT1G72970` (HTH) Glucose-methanol-choline (GMC) oxidoreductase family protein [Source:NCBI gene (formerly Entrezgene);Acc:843628] identity=64.5; qcov=0.959; evalue=0; confidence=high
Rice	`Os09g0363900` (ONI3) - identity=63.7; qcov=0.981; evalue=0; confidence=high
GO	GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors); GO:0050660 (flavin adenine dinucleotide binding)
KEGG	smil00073 (Cutin, suberine and wax biosynthesis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00732 (GMC_oxred_N); PF05199 (GMC_oxred_C)
InterPro	-
eggNOG	-
NR	GeneID:131013158

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	0.80000	`XP_057797180.1`
2	Endoplasmic reticulum	内质网	0.60000	`XP_057797182.1`
3	Endoplasmic reticulum lumen	内质网腔	0.20000	`XP_057797182.1`
4	Golgi apparatus	高尔基体	0.20000	`XP_057797182.1`
5	Lysosome	溶酶体	0.20000	`XP_057797180.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:66408597`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:66408612`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B69,D3
`Chr2:66408644`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B136,B56,B96
`Chr2:66408666`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr2:66408687`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B109,B34,B40
`Chr2:66408752`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B109,B34
`Chr2:66408765`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr2:66408802`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B131,B95,C14
`Chr2:66408877`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B110,B60,B79
`Chr2:66408999`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr2:66409008`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C12,C47
`Chr2:66409042`	`ATG`	`A`	2bp_deletion	frameshift_variant	4	B94,B98,C27,D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797180.1

586 aa

293

586

GMC_oxred_N

GMC_oxred_C

PF00732 GMC_oxred_N 55-323 aa PF05199 GMC_oxred_C 423-568 aa

XP_057797181.1

585 aa

292

585

GMC_oxred_N

GMC_oxred_C

PF00732 GMC_oxred_N 54-322 aa PF05199 GMC_oxred_C 422-567 aa

XP_057797182.1

584 aa

292

584

GMC_oxred_N

GMC_oxred_C

PF00732 GMC_oxred_N 53-321 aa PF05199 GMC_oxred_C 421-566 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797180.1`	Pfam	`PF00732`	GMC_oxred_N	Domain	55	323	2.2e-22	80.7	GMC oxidoreductase
`XP_057797180.1`	Pfam	`PF05199`	GMC_oxred_C	Domain	423	568	6e-29	102.1	GMC oxidoreductase
`XP_057797181.1`	Pfam	`PF00732`	GMC_oxred_N	Domain	54	322	2.2e-22	80.7	GMC oxidoreductase
`XP_057797181.1`	Pfam	`PF05199`	GMC_oxred_C	Domain	422	567	6e-29	102.1	GMC oxidoreductase
`XP_057797182.1`	Pfam	`PF00732`	GMC_oxred_N	Domain	53	321	2.2e-22	80.7	GMC oxidoreductase
`XP_057797182.1`	Pfam	`PF05199`	GMC_oxred_C	Domain	421	566	6e-29	102.1	GMC oxidoreductase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057941199.1
ATCTATCTATCTATCTATATATATATATATATATATATATGCATGCTTCTTATTAGTTCTTACATTCACAGAGGATTAAGTCCAACCAGTGAAAGCCACATCAATCAAGATATATATATCTTCTCTCTCTGTGCACTGTGTGTGTGTGTGTGTTTTGTGTTAGTGCCTTGAAATGGGGTTTGTTGGTGGAGGTGACTTTGCAGCTCTGTACTCTTGTTTACTCGTATGCATCGCCACTTTGCTCAGCCTTTGCCAAGGGA...

XM_057941197.1
ATATATATATATATATGCATGCTTCTTATTAGTTCTTACATTCACAGAGGATTAAGTCCAACCAGTGAAAGCCACATCAATCAAGATATATATATCTTCTCTCTCTGTGCACTGTGTGTGTGTGTGTGTTTTGTGTTAGTGCCTTGAAATGGGGTTTGTTGGTGGAGGTGACTTTGCAGCTCTGTACTCTTGTTTACTCGTATGCATCGCCACTTTGCTCAGCCTTTGCCAAGCAGCAGGGATGCAGCAGGCGGAGTACC...

CDS

3 records

下载 CDS FASTA

LOC131013158
ATGGGGTTTGTTGGTGGAGGTGACTTTGCAGCTCTGTACTCTTGTTTACTCGTATGCATCGCCACTTTGCTCAGCCTTTGCCAAGGGATGCAGCAGGCGGAGTACCGGTACCCGTTCATCAAAGCCGCGAGCTCGTGGCGAGGCAGCGTGGCGGAGTTCGACTACATAATAGTCGGCGGTGGAACTGCGGGGTGCCCCCTGGCAGCCACGCTGTCCCGTAACTACAGCGTTCTGCTGCTGGAGAGAGGCGGCACTCCCTT...

LOC131013158
ATGGGGTTTGTTGGTGGAGGTGACTTTGCAGCTCTGTACTCTTGTTTACTCGTATGCATCGCCACTTTGCTCAGCCTTTGCCAAGCAGGGATGCAGCAGGCGGAGTACCGGTACCCGTTCATCAAAGCCGCGAGCTCGTGGCGAGGCAGCGTGGCGGAGTTCGACTACATAATAGTCGGCGGTGGAACTGCGGGGTGCCCCCTGGCAGCCACGCTGTCCCGTAACTACAGCGTTCTGCTGCTGGAGAGAGGCGGCACTCC...

Protein

3 records

下载 Protein FASTA

XP_057797180.1
MGFVGGGDFAALYSCLLVCIATLLSLCQAAGMQQAEYRYPFIKAASSWRGSVAEFDYIIVGGGTAGCPLAATLSRNYSVLLLERGGTPFANSNVSFMHNFHIALADTSHTSPSQMFISTDGVFNSRARVLGGGTCINAGFYTRADQRFIKSVGWDEKLVNESYPWIEDQIVHEPEVTQWQEAVRDGLLEIGVSPFNGFTYDHKYGTKVGGTIFDRFGRRHTAAELLASANPDNLRVLVHATVEKIVFDTTGEKARGVGVI...

XP_057797181.1
MGFVGGGDFAALYSCLLVCIATLLSLCQAGMQQAEYRYPFIKAASSWRGSVAEFDYIIVGGGTAGCPLAATLSRNYSVLLLERGGTPFANSNVSFMHNFHIALADTSHTSPSQMFISTDGVFNSRARVLGGGTCINAGFYTRADQRFIKSVGWDEKLVNESYPWIEDQIVHEPEVTQWQEAVRDGLLEIGVSPFNGFTYDHKYGTKVGGTIFDRFGRRHTAAELLASANPDNLRVLVHATVEKIVFDTTGEKARGVGVIF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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