当前解析结果
SmilChr02G004412| 统一新 Gene ID | SmilChr02G004412 |
|---|---|
| 名称 | SmilChr02G004412 |
| 描述 | beta-galactosidase-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 66454537 - 66460905 / - |
| NCBI Gene ID | LOC131013162 |
|---|---|
| GeneID | 131013162 |
| locus_tag | - |
| NCBI Name | LOC131013162 |
| 原始查询 | SmilChr02G004412 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | beta-galactosidase-like |
| 产物 | beta-galactosidase-like |
| Arabidopsis | AT3G13750 (BGAL1)beta galactosidase 1 [Source:NCBI gene (formerly Entrezgene);Acc:820584] identity=77.9; qcov=0.995; evalue=0; confidence=high |
| Rice | Os01g0580200 (OsBgal3)- identity=70.2; qcov=0.968; evalue=0; confidence=high |
| GO | GO:0004565 (beta-galactosidase activity); GO:0005618 (cell wall); GO:0005773 (vacuole); GO:0005975 (carbohydrate metabolic process); GO:0030246 (carbohydrate binding) |
| KEGG | - |
| Pfam | PF01301 (Glyco_hydro_35); PF02140 (SUEL_Lectin); PF02449 (Glyco_hydro_42); PF17834 (GHD); PF21467 (BetaGal_gal-bd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013162 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.80000 | XP_057797185.1 |
| 2 | Vacuole | 液泡 | 0.40000 | XP_057797185.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057797185.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057797185.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057797185.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:66454921 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B62,C5,C64,C66,C77 |
Chr2:66455214 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B130,B137 |
Chr2:66455301 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr2:66455308 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr2:66455330 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B136,C20 |
Chr2:66455758 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B80 |
Chr2:66455758 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B80 |
Chr2:66455779 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr2:66455801 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:66455831 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr2:66455976 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B130,B137 |
Chr2:66456023 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C12 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797185.1PF01301
Glyco_hydro_35 33-337 aa
PF02449
Glyco_hydro_42 54-187 aa
PF17834
GHD 360-416 aa
PF21467
BetaGal_gal-bd 468-535 aa
PF21467
BetaGal_gal-bd 617-703 aa
PF02140
SUEL_Lectin 760-837 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797185.1 |
Pfam | PF01301 |
Glyco_hydro_35 | Domain | 33 | 337 | 4.7e-120 | 401.7 | Glycosyl hydrolases family 35 |
XP_057797185.1 |
Pfam | PF02449 |
Glyco_hydro_42 | Domain | 54 | 187 | 3.8e-08 | 33.8 | Beta-galactosidase |
XP_057797185.1 |
Pfam | PF17834 |
GHD | Domain | 360 | 416 | 6.9e-23 | 80.8 | Beta-sandwich domain in beta galactosidase |
XP_057797185.1 |
Pfam | PF21467 |
BetaGal_gal-bd | Domain | 468 | 535 | 2.4e-36 | 124.4 | Beta-galactosidase, galactose-binding domain |
XP_057797185.1 |
Pfam | PF21467 |
BetaGal_gal-bd | Domain | 617 | 703 | 2.4e-36 | 124.4 | Beta-galactosidase, galactose-binding domain |
XP_057797185.1 |
Pfam | PF02140 |
SUEL_Lectin | Domain | 760 | 837 | 4.2e-22 | 79.0 | D-galactoside/L-rhamnose binding SUEL lectin domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。