当前解析结果
SmilChr02G004423| 统一新 Gene ID | SmilChr02G004423 |
|---|---|
| 名称 | SmilChr02G004423 |
| 描述 | protein CHUP1, chloroplastic-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 66565488 - 66567900 / - |
| NCBI Gene ID | LOC131013174 |
|---|---|
| GeneID | 131013174 |
| locus_tag | - |
| NCBI Name | LOC131013174 |
| 原始查询 | SmilChr02G004423 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein CHUP1, chloroplastic-like |
| 产物 | protein CHUP1%2C chloroplastic-like |
| Arabidopsis | AT1G52080 (AR791)actin binding protein family [Source:NCBI gene (formerly Entrezgene);Acc:841637] identity=37.6; qcov=0.749; evalue=3.56e-69; confidence=medium |
| Rice | Os05g0185800 (OJ1111_A10.14)- identity=38.6; qcov=0.715; evalue=4.54e-56; confidence=medium |
| GO | GO:0009658 (chloroplast organization); GO:0009707 (chloroplast outer membrane) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013174 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057797208.1 |
| 2 | Nucleus | 细胞核 | 0.20000 | XP_057797208.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057797208.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057797208.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057797208.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:66565693 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B93 |
Chr2:66565801 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:66566003 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C5 |
Chr2:66566240 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B134 |
Chr2:66566315 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:66566327 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B130,B137 |
Chr2:66566598 |
TCG |
T |
2bp_deletion | frameshift_variant | 1 | B124 |
Chr2:66566598 |
TCG |
T |
2bp_deletion | CDS_variant | 1 | B124 |
Chr2:66566606 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A21,B103,B127,B20,B54 |
Chr2:66566781 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B43,B54,B60 |
Chr2:66566783 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B43,B54,B60 |
Chr2:66566861 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B75,C35,C4 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。