当前解析结果
SmilChr02G004424| 统一新 Gene ID | SmilChr02G004424 |
|---|---|
| 名称 | SmilChr02G004424 |
| 描述 | protein IQ-domain 26-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 66570968 - 66573813 / - |
| NCBI Gene ID | LOC131013176 |
|---|---|
| GeneID | 131013176 |
| locus_tag | - |
| NCBI Name | LOC131013176 |
| 原始查询 | SmilChr02G004424 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein IQ-domain 26-like |
| 产物 | protein IQ-domain 26-like |
| Arabidopsis | AT3G16490 (IQD26)IQ-domain 26 [Source:NCBI gene (formerly Entrezgene);Acc:820897] identity=49.8; qcov=1.05; evalue=4.36e-86; confidence=high |
| Rice | Os05g0187500 (GW5)- identity=43.6; qcov=1.22; evalue=5.94e-66; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00612 (IQ); PF13178 (DUF4005) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013176 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057797210.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057797209.1 |
| 3 | Nucleus membrane | 核膜 | 0.20000 | XP_057797209.1 |
| 4 | Cytoskeleton | 细胞骨架 | 0.20000 | XP_057797210.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057797209.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:66571349 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B42,B43,D11 |
Chr2:66571435 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B84,C37 |
Chr2:66571576 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr2:66571631 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B84,C37 |
Chr2:66571675 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A21,B53,B71,C45 |
Chr2:66571742 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C74,D10 |
Chr2:66572014 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B69,C36 |
Chr2:66572035 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr2:66572367 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B69,C36 |
Chr2:66572559 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A21,B53,B71,C45 |
Chr2:66572686 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B45 |
Chr2:66573279 |
CA |
C |
1bp_deletion | frameshift_variant | 4 | A10,C2,C32,C68 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797209.1PF00612
IQ 198-216 aa
PF00612
IQ 222-236 aa
PF13178
DUF4005 382-458 aa
XP_057797210.1PF00612
IQ 115-133 aa
PF00612
IQ 139-153 aa
PF13178
DUF4005 298-375 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797209.1 |
Pfam | PF00612 |
IQ | Motif | 198 | 216 | 2.1e-10 | 40.2 | IQ calmodulin-binding motif |
XP_057797209.1 |
Pfam | PF00612 |
IQ | Motif | 222 | 236 | 2.1e-10 | 40.2 | IQ calmodulin-binding motif |
XP_057797209.1 |
Pfam | PF13178 |
DUF4005 | Family | 382 | 458 | 1.5e-12 | 48.7 | Protein of unknown function (DUF4005) |
XP_057797210.1 |
Pfam | PF00612 |
IQ | Motif | 115 | 133 | 1.3e-10 | 40.8 | IQ calmodulin-binding motif |
XP_057797210.1 |
Pfam | PF00612 |
IQ | Motif | 139 | 153 | 1.3e-10 | 40.8 | IQ calmodulin-binding motif |
XP_057797210.1 |
Pfam | PF13178 |
DUF4005 | Family | 298 | 375 | 1.1e-12 | 49.1 | Protein of unknown function (DUF4005) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。