当前解析结果
SmilChr02G004444| 统一新 Gene ID | SmilChr02G004444 |
|---|---|
| 名称 | SmilChr02G004444 |
| 描述 | uncharacterized SmilChr02G004444 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 66790713 - 66793924 / + |
| NCBI Gene ID | LOC131013193 |
|---|---|
| GeneID | 131013193 |
| locus_tag | - |
| NCBI Name | LOC131013193 |
| 原始查询 | SmilChr02G004444 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Metal-dependent protein hydrolase [Source:NCBI gene (formerly Entrezgene);Acc:834202]; symbol=AT5G41970; hit=AT5G41970; species=arabidopsis; confidence=high |
| 产物 | Metal-dependent protein hydrolase [Source:NCBI gene (formerly Entrezgene);Acc:834202]; symbol=AT5G41970; hit=AT5G41970; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G41970 (AT5G41970)Metal-dependent protein hydrolase [Source:NCBI gene (formerly Entrezgene);Acc:834202] identity=79.9; qcov=0.904; evalue=0; confidence=high |
| Rice | Os02g0686600- identity=79.5; qcov=0.887; evalue=0; confidence=high |
| GO | GO:0005634 (nucleus); GO:0005737 (cytoplasm) |
| KEGG | - |
| Pfam | PF03690 (MYG1_exonuc) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013193 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057797240.1 |
| 2 | Mitochondrion matrix | 线粒体基质 | 1.00000 | XP_057797240.1 |
| 3 | Cytosol | 细胞质基质 | 0.80000 | XP_057797240.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057797240.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057797240.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:66790970 |
GT |
G |
1bp_deletion | frameshift_variant | 1 | B70 |
Chr2:66790970 |
GT |
G |
1bp_deletion | CDS_variant | 1 | B70 |
Chr2:66791597 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr2:66792015 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A11,A21,B104,B130,B137 |
Chr2:66792099 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A7,C31 |
Chr2:66792120 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B1,B29,B4,C8,D3 |
Chr2:66793619 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057797240.1PF03690
MYG1_exonuc 43-361 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797240.1 |
Pfam | PF03690 |
MYG1_exonuc | Family | 43 | 361 | 1.3e-139 | 465.9 | Uncharacterised protein family (UPF0160) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。