当前解析结果
SmilChr02G004450| 统一新 Gene ID | SmilChr02G004450 |
|---|---|
| 名称 | SmilChr02G004450 |
| 描述 | putative wall-associated receptor kinase-like 11 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 66852740 - 66857737 / - |
| NCBI Gene ID | LOC131013200 |
|---|---|
| GeneID | 131013200 |
| locus_tag | - |
| NCBI Name | LOC131013200 |
| 原始查询 | SmilChr02G004450 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative wall-associated receptor kinase-like 11 |
| 产物 | putative wall-associated receptor kinase-like 11 |
| Arabidopsis | AT1G69730 (AT1G69730)Wall-associated kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:843309] identity=40.8; qcov=1.03; evalue=4.81e-170; confidence=medium |
| Rice | Os04g0598900 (OsWAK50)- identity=42.4; qcov=0.96; evalue=1.14e-169; confidence=medium |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005509 (calcium ion binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0007166 (cell surface receptor signaling pathway); GO:0030247 (polysaccharide binding) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07645 (EGF_CA); PF07714 (PK_Tyr_Ser-Thr); PF12947 (EGF_3); PF13947 (GUB_WAK_bind) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013200 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057797249.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057797249.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057797249.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057797249.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057797249.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:66853031 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A24 |
Chr2:66853045 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B130,B137 |
Chr2:66853150 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr2:66853243 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A24 |
Chr2:66853258 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:66853263 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B115,B69,C45,C83 |
Chr2:66853462 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr2:66853607 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B138 |
Chr2:66853787 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr2:66853799 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,B78,C8 |
Chr2:66853879 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr2:66853883 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B53,C79 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797249.1PF13947
GUB_WAK_bind 29-85 aa
PF07645
EGF_CA 303-339 aa
PF12947
EGF_3 311-338 aa
PF00069
Pkinase 424-691 aa
PF07714
PK_Tyr_Ser-Thr 426-694 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797249.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 29 | 85 | 8.5e-09 | 36.4 | Wall-associated receptor kinase galacturonan-binding |
XP_057797249.1 |
Pfam | PF07645 |
EGF_CA | Domain | 303 | 339 | 2.2e-08 | 34.9 | Calcium-binding EGF domain |
XP_057797249.1 |
Pfam | PF12947 |
EGF_3 | Domain | 311 | 338 | 1.5e-09 | 38.6 | EGF domain |
XP_057797249.1 |
Pfam | PF00069 |
Pkinase | Domain | 424 | 691 | 5.2e-50 | 171.0 | Protein kinase domain |
XP_057797249.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 426 | 694 | 1.1e-48 | 166.6 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。