Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G004458

染色体: Chr02 坐标: 66987703-66989125 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G004458
名称SmilChr02G004458
描述wall-associated receptor kinase-like 1
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向66987703 - 66989125 / -

ID 对照

NCBI Gene IDLOC131012022
GeneID131012022
locus_tag-
NCBI NameLOC131012022
原始查询SmilChr02G004458

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述wall-associated receptor kinase-like 1
产物wall-associated receptor kinase-like 1
ArabidopsisAT1G16120 (WAKL1)
wall associated kinase-like 1 [Source:NCBI gene (formerly Entrezgene);Acc:838181]
identity=58.7; qcov=0.904; evalue=4.86e-144; confidence=high
RiceOs02g0632100
-
identity=52.6; qcov=0.916; evalue=8.31e-129; confidence=high
GOGO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0007166 (cell surface receptor signaling pathway)
KEGG-
PfamPF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro-
eggNOG-
NRGeneID:131012022

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057795910.1
2 Nucleus 细胞核 0.00000 XP_057795910.1
3 Chromosome 染色体 0.00000 XP_057795910.1
4 Centromere 着丝粒 0.00000 XP_057795910.1
5 Chromatin 染色质 0.00000 XP_057795910.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:66988134 G A EMS_canonical_SNV CDS_variant 1 B140
Chr2:66988161 C T EMS_canonical_SNV CDS_variant 3 A7,B139,D1
Chr2:66988240 C T EMS_canonical_SNV CDS_variant 3 A7,B139,D1
Chr2:66988314 C T EMS_canonical_SNV CDS_variant 3 B115,C45,C83
Chr2:66988419 G A EMS_canonical_SNV CDS_variant 2 B140,C78
Chr2:66988508 G A EMS_canonical_SNV CDS_variant 2 B53,C71
Chr2:66988551 G A EMS_canonical_SNV CDS_variant 1 B69
Chr2:66988626 T TA 1bp_insertion frameshift_variant 1 B140
Chr2:66988626 T TA 1bp_insertion CDS_variant 1 B140
Chr2:66988661 C T EMS_canonical_SNV CDS_variant 1 C14
Chr2:66988674 G A EMS_canonical_SNV CDS_variant 2 B94,B98
Chr2:66988729 G A EMS_canonical_SNV CDS_variant 3 B130,B137,B91

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057795910.1
394 aa
N
1
197
394
Pkinase
PK_Tyr_Ser-Thr
C
PF00069 Pkinase 85-352 aa PF07714 PK_Tyr_Ser-Thr 88-355 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057795910.1 Pfam PF00069 Pkinase Domain 85 352 6.9e-49 167.3 Protein kinase domain
XP_057795910.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 88 355 1.3e-47 163.0 Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057939927.1
ATGTTTATATGTTCATGGTTTCTCAATCGAGTAATTTTATATACAGGTATGGGCTCTGGATTAGGATTTCTATTACTCCTTTTAGCATGTTTTTGGTTGTATAAGGTGTTCAAAAAGAGAATGGAAAGAATACATAGAAAGAAATTCTTCAAACGAAATGGTGGCCTTCTCTTGAAACAACAAACAAATGAAGGCACACTTGAAAAAACCAAAATTTTTCCTGCAAAAGAGTTGGAGGTAGCCACTGATTACTTCAATGA...

CDS

1 records

下载 CDS FASTA
LOC131012022
ATGTTTATATGTTCATGGTTTCTCAATCGAGTAATTTTATATACAGGTATGGGCTCTGGATTAGGATTTCTATTACTCCTTTTAGCATGTTTTTGGTTGTATAAGGTGTTCAAAAAGAGAATGGAAAGAATACATAGAAAGAAATTCTTCAAACGAAATGGTGGCCTTCTCTTGAAACAACAAACAAATGAAGGCACACTTGAAAAAACCAAAATTTTTCCTGCAAAAGAGTTGGAGGTAGCCACTGATTACTTCAATGA...

Protein

1 records

下载 Protein FASTA
XP_057795910.1
MFICSWFLNRVILYTGMGSGLGFLLLLLACFWLYKVFKKRMERIHRKKFFKRNGGLLLKQQTNEGTLEKTKIFPAKELEVATDYFNENRILGDGGQGTVYKGMLADGKIVPIKKSKLVEENQLEQFINEVAILSQINHRNVVRLLGCCLETEVPLLVYEFMPNGTLYNLIHDRNNEFSFPWNMRLKIAADIAGALAYLHSASSVAIYHRDIKSSNLLLDEKYVVKVSDFGTSKFIAADQTHLTTLVKGTFGYLDPEYFNS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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