当前解析结果
SmilChr02G004458| 统一新 Gene ID | SmilChr02G004458 |
|---|---|
| 名称 | SmilChr02G004458 |
| 描述 | wall-associated receptor kinase-like 1 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 66987703 - 66989125 / - |
| NCBI Gene ID | LOC131012022 |
|---|---|
| GeneID | 131012022 |
| locus_tag | - |
| NCBI Name | LOC131012022 |
| 原始查询 | SmilChr02G004458 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | wall-associated receptor kinase-like 1 |
| 产物 | wall-associated receptor kinase-like 1 |
| Arabidopsis | AT1G16120 (WAKL1)wall associated kinase-like 1 [Source:NCBI gene (formerly Entrezgene);Acc:838181] identity=58.7; qcov=0.904; evalue=4.86e-144; confidence=high |
| Rice | Os02g0632100- identity=52.6; qcov=0.916; evalue=8.31e-129; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0007166 (cell surface receptor signaling pathway) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012022 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057795910.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057795910.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057795910.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057795910.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057795910.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:66988134 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr2:66988161 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A7,B139,D1 |
Chr2:66988240 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A7,B139,D1 |
Chr2:66988314 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B115,C45,C83 |
Chr2:66988419 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B140,C78 |
Chr2:66988508 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B53,C71 |
Chr2:66988551 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr2:66988626 |
T |
TA |
1bp_insertion | frameshift_variant | 1 | B140 |
Chr2:66988626 |
T |
TA |
1bp_insertion | CDS_variant | 1 | B140 |
Chr2:66988661 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr2:66988674 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B94,B98 |
Chr2:66988729 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B130,B137,B91 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057795910.1PF00069
Pkinase 85-352 aa
PF07714
PK_Tyr_Ser-Thr 88-355 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795910.1 |
Pfam | PF00069 |
Pkinase | Domain | 85 | 352 | 6.9e-49 | 167.3 | Protein kinase domain |
XP_057795910.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 88 | 355 | 1.3e-47 | 163.0 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。